| Literature DB >> 28656251 |
Marcin Opławski1, Mateusz Michalski2, Andrzej Witek3, Bogdan Michalski4, Nikola Zmarzły5, Agnieszka Jęda-Golonka2, Maria Styblińska5, Joanna Gola5, Małgorzata Kasprzyk-Żyszczyńska1, Urszula Mazurek5, Andrzej Plewka1.
Abstract
The publication of the human genome sequence provided direction in the search for novel diagnostic and therapeutic methods for the treatment of human diseases. The aim of the present study was to investigate the hypothesis that the expression profile of genes involved in the regulation of angiogenesis may be a marker in endometrial cancer that facilitates the diagnosis and prognosis of patients, as well as the identification of novel therapeutic targets. The current study included 36 patients with grade (G) 1 to 3 endometrial cancer, and a control group of patients consisting of females that qualified for the removal of the uterus. Out of these, 28 samples (control, 3; G1, 7; G2, 12; and G3, 6) were selected for microarray analysis. Molecular analysis of the endometrial samples involved the extraction of total RNA, purification of the obtained extracts and subsequent analysis of the gene expression profiles using an oligonucleotide microarray technique (GeneChip® Human Genome U133A plates). The results indicated that the mRNA expression profile of genes involved in the regulation of angiogenesis varies depending on the degree of histological differentiation of endometrial adenocarcinoma. Similar results were obtained from descriptive statistics characterizing the expression profile of 691 mRNAs associated with the regulation of angiogenesis in the groups of patients with endometrial adenocarcinoma. In addition, the results of the present study indicated that neuropilin2 (NRP2) may serve an important role in the activity of endothelial cells, and may affect vascular endothelial growth factor, and potentially plexins and integrins via regulation of their functions. An understanding of how these proteins interact remains to be determined; however, elucidating these interactions may provide an explanation for the mechanisms underlying angiogenesis. In conclusion, the results of the present study suggest that NRP2 may be a valuable target for investigation in future pharmacological studies involving angiogenesis in endometrial cancer.Entities:
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Year: 2017 PMID: 28656251 PMCID: PMC5547990 DOI: 10.3892/mmr.2017.6868
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Figure 1.Fragment of a dendrogram representing the hierarchical clustering of transcriptomes among C, G1, G2 and G3 groups, which demonstrates the similarity of mRNA expression profiles of genes involved in the regulation of angiogenesis. The probe set IDs represent the mRNA sequences identified by an over-representation test using PANTHER software. The blue color indicates the lowest fluorescence signal, while red indicates the highest fluorescence signal. C, control; G, grade of endometrial adenocarcinoma; ID, identification number.
Figure 2.Box-and-whisker plot of the normalized fluorescence intensity values of 227 mRNA sequences of transcriptomes in the C, G1, G2 and G3 groups. Black lines indicate median values, the height of the rectangle indicates the interquartile range, and red lines indicate signals deviating from the interquartile range by ≥150%. C, control; G, grade of endometrial adenocarcinoma.
Number of mRNA sequences associated with angiogenesis that were significantly, differentially expressed in patients with endometrial adenocarcinoma when compared with controls.
| P-value | Number of mRNAs |
|---|---|
| >0.020 to <0.050 | 203 |
| >0.010 to <0.020 | 140 |
| >0.005 to <0.010 | 115 |
| >0.001 to <0.005 | 82 |
| <0.001 | 45 |
The expression of a total of 691 mRNAs associated with the regulation of angiogenesis was compared between controls and patients with endometrial adenocarcinoma, 585 exhibited significantly altered expression levels.
Number of mRNA sequences that were differentially expressed among the transcriptome groups.
| Transcriptome group | C | G1 | G2 | G3 |
|---|---|---|---|---|
| C | 203 | 27[ | 113[ | 81[ |
| G1 | 176 | 203 | 86[ | 90[ |
| G2 | 90 | 117 | 203 | 32[ |
| G3 | 122 | 113 | 171 | 203 |
C, control; G, grade of endometrial adenocarcinoma.
P<0.05 vs. C group
P<0.05 vs. G1 group
P<0.05 vs. G2 group.
Figure 3.Venn diagram grouping of differentially expressed mRNA sequences among G1, G2 and G3 groups compared with the C group. Entity list 1, G1 vs. C; entity list 2, G2 vs. C; Entity list 3, G3 vs. C. C, control; G, grade of endometrial carcinoma.
Genes essential for the regulation of angiogenesis in different histological grades of endometrial adenocarcinoma.
| mRNAs important for tumor angiogenesis | |||||
|---|---|---|---|---|---|
| Groups compared | Total number of differentially expressed mRNAsa | ID | Symbol | P-value | FC (log2) |
| G1 vs. C | 15 | 201808_s_at | ENG | 0.0013 | (+) 1.66033 |
| 207379_at | EDIL3 | 0.0018 | (+) 1.79402 | ||
| 214632_at | NRP2 | 0.0130 | (+) 1.85248 | ||
| G2 vs. C | 43 | 203070_at | SEMA3B | 0.0019 | (+) 1.50104 |
| G3 vs. C | 15 | 35666_at | SEMA3F | <0.001 | (+) 1.55995 |
| G1 vs. C; G2 vs. C | 5 | – | – | – | – |
| G1 vs. C; G3 vs. C | 1 | – | – | – | – |
| G2 vs. C; G3 vs. C | 59 | 206702_at | TEK | <0.001 | (−) 2.15583 |
| 209946_at | VEGF C | <0.001 | (−) 2.33019 | ||
| 201809_s_at | ENG | <0.001 | (−) 2.74506 | ||
| 205405_at | SEMA5A | <0.001 | (−) 3.05802 | ||
| 213169_at | SEMA5A | 0.0052 | (−) 3.51414 | ||
| 213844_at | HOXA5 | 0.0067 | (−) 3.53497 | ||
| G1 vs. C; G2 vs. C; G3 vs. C | 6 | – | – | – | – |
Genes were identified by one-way analysis of variance with a Tukey's post hoc test, followed by Venn diagram construction using the GeneSpring GX program, and over-representation analysis using the Gene List Analysis tool in PANTHER. A total of 27 mRNA sequences were identified in the G1 vs. C group, 113 mRNA sequences in the G2 vs. C group and 81 mRNA sequences in the G3 vs. C group.‘(+)’ indicates overexpression of a gene/increase in mRNA levels, while ‘(−)’ indicates gene silencing/decrease in mRNA levels. ID represents the mRNA sequences identified by an over-representation test using PANTHER. ID, identification number; FC, fold-change; C, control; G, grade of endometrial adenocarcinoma; ENG, endoglin; EDIL3, EGF like repeats and discoidin domains 3; NRP2, neuropilin 2; SEMA, semaphorin; TEK, TEK receptor tyrosine kinase; VEGF C, vascular endothelial growth factor C; HOXA5, homeobox A5.