Literature DB >> 28654750

Combining Static and Dynamical Approaches for Infrared Spectra Calculations of Gas Phase Molecules and Clusters.

Daria R Galimberti1,2,3, Alberto Milani1, Matteo Tommasini1, Chiara Castiglioni1, Marie-Pierre Gaigeot2,3.   

Abstract

Four models for the calculation of the IR spectrum of gas phase molecules and clusters from molecular dynamics simulations are presented with the aim to reduce the computational cost of the usual Fourier transform (FT) of the time correlation function of the dipole moment. These models are based on the VDOS, FT of time correlation function of velocities, and atomic polar tensors (APT). The models differ from each other by the number of APTs inserted into the velocities correlation function. Excellent accuracy is achieved by the model adopting a weighted linear combination of a few selected APTs adapted for the rotation of the molecule (model D). The achieved accuracy relates to band positions, band shapes, and band intensities. Depending on the degree of actual dynamics of the molecule, rotational motion, conformational isomerization, and large amplitude motions that can be seen during the finite temperature trajectory, one could also apply one of the other models (models A, B, or C), but with caution. Model D is therefore found simple and accurate, with appealing computational cost and should be systematically applied. Its generalization to condensed phase systems should be straightforward.

Entities:  

Year:  2017        PMID: 28654750     DOI: 10.1021/acs.jctc.7b00471

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Wrapping Up Hydrophobic Hydration: Locality Matters.

Authors:  V Conti Nibali; S Pezzotti; F Sebastiani; D R Galimberti; G Schwaab; M Heyden; M-P Gaigeot; M Havenith
Journal:  J Phys Chem Lett       Date:  2020-06-05       Impact factor: 6.475

2.  Protonated glycine supramolecular systems: the need for quantum dynamics.

Authors:  Fabio Gabas; Giovanni Di Liberto; Riccardo Conte; Michele Ceotto
Journal:  Chem Sci       Date:  2018-09-17       Impact factor: 9.825

Review 3.  Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain.

Authors:  Sjors Bakels; Marie-Pierre Gaigeot; Anouk M Rijs
Journal:  Chem Rev       Date:  2020-02-19       Impact factor: 60.622

4.  Vibrational Circular Dichroism from DFT Molecular Dynamics: The AWV Method.

Authors:  Daria Ruth Galimberti
Journal:  J Chem Theory Comput       Date:  2022-09-16       Impact factor: 6.578

5.  Molecular Fingerprints of Hydrophobicity at Aqueous Interfaces from Theory and Vibrational Spectroscopies.

Authors:  Simone Pezzotti; Alessandra Serva; Federico Sebastiani; Flavio Siro Brigiano; Daria Ruth Galimberti; Louis Potier; Serena Alfarano; Gerhard Schwaab; Martina Havenith; Marie-Pierre Gaigeot
Journal:  J Phys Chem Lett       Date:  2021-04-14       Impact factor: 6.475

  5 in total

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