Literature DB >> 28651436

Beyond the beaten path: improving natural products bioprospecting using an eco-evolutionary framework - the case of the octocorals.

Jean-Baptiste Ledoux1,2, Agostinho Antunes1,3.   

Abstract

Marine natural products (NPs) represent an impressive source of novel bioactive molecules with major biotechnological applications. Nevertheless, the usual chemical and applied perspective leading most of bioprospecting projects come along with various limitations blurring our understanding of the extensive marine chemical diversity. Here, we propose several guidelines: (i) to optimize bioprospecting and (ii) to refine our knowledge on marine chemical ecology focusing on octocorals, one of the most promising sources of marine NPs. We identified a significant phylogenetic bias in the octocoral bioprospecting, which calls for the development of a concerted discovery strategy. Given the gap existing between the number of isolated NPs and the knowledge regarding their functions, we provide an ecologically centered workflow prioritizing biological function ahead of chemical identification. Furthermore, we illustrate how -omic technologies should rapidly increase our knowledge on solving different aspects of the ecology and evolution of marine NPs.

Keywords:  -omic technologies; Octocoral; bioassays; biosynthesis patterns; chemical ecology; common garden experiments; concerted discovery strategy; eco-evolutionary processes; ecological function; in silico bioprospecting; metagenomic; natural products; owner of the gene; reciprocal transplant experiments; transcriptomic

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Year:  2017        PMID: 28651436     DOI: 10.1080/07388551.2017.1331335

Source DB:  PubMed          Journal:  Crit Rev Biotechnol        ISSN: 0738-8551            Impact factor:   8.429


  2 in total

1.  Shotgun Proteomics of Ascidians Tunic Gives New Insights on Host-Microbe Interactions by Revealing Diverse Antimicrobial Peptides.

Authors:  Ana Matos; Dany Domínguez-Pérez; Daniela Almeida; Guillermin Agüero-Chapin; Alexandre Campos; Hugo Osório; Vitor Vasconcelos; Agostinho Antunes
Journal:  Mar Drugs       Date:  2020-07-13       Impact factor: 5.118

2.  A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome.

Authors:  Justin B Jiang; Andrea M Quattrini; Warren R Francis; Joseph F Ryan; Estefanía Rodríguez; Catherine S McFadden
Journal:  Gigascience       Date:  2019-04-01       Impact factor: 6.524

  2 in total

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