Literature DB >> 28650260

Group 4 late embryogenesis abundant proteins as a model to study intrinsically disordered proteins in plants.

Cesar L Cuevas-Velazquez1, Jose Luis Reyes1, Alejandra A Covarrubias1.   

Abstract

Late Embryogenesis Abundant (LEA) proteins comprise a heterogeneous group of proteins that accumulate to high levels in the dry seed and in vegetative plant tissues under water deficit. We recently reported that group 4 LEA proteins from Arabidopsis thaliana, regardless of their structural disorder prevalent in aqueous solution, are able to fold into α-helix when subjected to water deficit and/or macromolecular crowding environments. Interestingly, the ability to gain structure under water limiting conditions is circumscribed to the N-terminal conserved region. This environment- driven conformational plasticity has a functional impact because the conserved N-terminal region is necessary and sufficient to prevent the inactivation and/or aggregation of reporter enzymes, when they are subjected to partial dehydration or freeze-thaw treatments. In this addendum we present a broader analysis of the data and propose that the mechanism by which group 4 LEA proteins exert their chaperone-like activity occurs via a selection of particular LEA structural conformations favored by water deficit environments. In addition, we include further observations regarding the abundance and conservation of histidine residues in LEA proteins of this group, particularly at the C-terminal variable region, supporting the presence of an additional function in the same polypeptides as metal ion sequesters. The structural characteristics of group 4 LEA proteins together with their conceivable multifunctionality, a widespread feature in Intrinsically Disordered Proteins (IDPs), raises the possibility of using this set of proteins as a model to investigate the structure-function relationship of IDPs in plants.

Entities:  

Keywords:  Intrinsically disordered proteins; late embryogenesis abundant proteins; plant molecular biology; protein folding; protein structure; stress response; water deficit

Mesh:

Substances:

Year:  2017        PMID: 28650260      PMCID: PMC5586357          DOI: 10.1080/15592324.2017.1343777

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  33 in total

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Review 2.  The enigmatic LEA proteins and other hydrophilins.

Authors:  Marina Battaglia; Yadira Olvera-Carrillo; Alejandro Garciarrubio; Francisco Campos; Alejandra A Covarrubias
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Authors:  Lucero Y Rivera-Najera; Gloria Saab-Rincón; Marina Battaglia; Carlos Amero; Nancy O Pulido; Enrique García-Hernández; Rosa M Solórzano; José L Reyes; Alejandra A Covarrubias
Journal:  J Biol Chem       Date:  2014-09-30       Impact factor: 5.157

Review 4.  Distinguishing induced fit from conformational selection.

Authors:  Stefano Gianni; Jakob Dogan; Per Jemth
Journal:  Biophys Chem       Date:  2014-04-01       Impact factor: 2.352

5.  Group 3 LEA protein model peptides protect enzymes against desiccation stress.

Authors:  Takao Furuki; Minoru Sakurai
Journal:  Biochim Biophys Acta       Date:  2016-04-27

6.  Structural investigation of disordered stress proteins. Comparison of full-length dehydrins with isolated peptides of their conserved segments.

Authors:  Jean-Marie Mouillon; Petter Gustafsson; Pia Harryson
Journal:  Plant Physiol       Date:  2006-03-24       Impact factor: 8.340

7.  Identifying Zn-bound histidine residues in metalloproteins using hydrogen-deuterium exchange mass spectrometry.

Authors:  Jia Dong; Katie L Callahan; Nicholas B Borotto; Richard W Vachet
Journal:  Anal Chem       Date:  2013-12-13       Impact factor: 6.986

8.  Functional dissection of hydrophilins during in vitro freeze protection.

Authors:  José L Reyes; Francisco Campos; Hui Wei; Rajeev Arora; Yongil Yang; Dale T Karlson; Alejandra A Covarrubias
Journal:  Plant Cell Environ       Date:  2008-08-26       Impact factor: 7.228

9.  Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains.

Authors:  F Campos; C Cuevas-Velazquez; M A Fares; J L Reyes; A A Covarrubias
Journal:  Mol Genet Genomics       Date:  2013-07-17       Impact factor: 3.291

10.  Characterization of two soybean (Glycine max L.) LEA IV proteins by circular dichroism and Fourier transform infrared spectrometry.

Authors:  Ming-der Shih; Tzung-Yang Hsieh; Tsai-Piao Lin; Yue-Ie C Hsing; Folkert A Hoekstra
Journal:  Plant Cell Physiol       Date:  2010-01-12       Impact factor: 4.927

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  11 in total

Review 1.  Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2018-07-31       Impact factor: 9.261

2.  Desiccation Tolerance in Ramonda serbica Panc.: An Integrative Transcriptomic, Proteomic, Metabolite and Photosynthetic Study.

Authors:  Marija Vidović; Ilaria Battisti; Ana Pantelić; Filis Morina; Giorgio Arrigoni; Antonio Masi; Sonja Veljović Jovanović
Journal:  Plants (Basel)       Date:  2022-04-28

3.  Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants.

Authors:  Mariana Aline Silva Artur; Tao Zhao; Wilco Ligterink; Eric Schranz; Henk W M Hilhorst
Journal:  Genome Biol Evol       Date:  2019-02-01       Impact factor: 3.416

4.  Structural Plasticity of Intrinsically Disordered LEA Proteins from Xerophyta schlechteri Provides Protection In Vitro and In Vivo.

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Journal:  Front Plant Sci       Date:  2019-10-10       Impact factor: 5.753

Review 5.  Lysine, Lysine-Rich, Serine, and Serine-Rich Proteins: Link Between Metabolism, Development, and Abiotic Stress Tolerance and the Role of ncRNAs in Their Regulation.

Authors:  P B Kavi Kishor; Renuka Suravajhala; Guddimalli Rajasheker; Nagaraju Marka; Kondle Kavya Shridhar; Divya Dhulala; Korubothula Prakash Scinthia; Kummari Divya; Madhavi Doma; Sujatha Edupuganti; Prashanth Suravajhala; Rathnagiri Polavarapu
Journal:  Front Plant Sci       Date:  2020-12-03       Impact factor: 5.753

Review 6.  The Orthodox Dry Seeds Are Alive: A Clear Example of Desiccation Tolerance.

Authors:  Angel J Matilla
Journal:  Plants (Basel)       Date:  2021-12-22

7.  In Silico Characterisation of the Late Embryogenesis Abundant (LEA) Protein Families and Their Role in Desiccation Tolerance in Ramonda serbica Panc.

Authors:  Ana Pantelić; Strahinja Stevanović; Sonja Milić Komić; Nataša Kilibarda; Marija Vidović
Journal:  Int J Mol Sci       Date:  2022-03-24       Impact factor: 5.923

8.  Calreticulin: Challenges Posed by the Intrinsically Disordered Nature of Calreticulin to the Study of Its Function.

Authors:  Lilian Varricchio; Mario Falchi; Massimiliano Dall'Ora; Caterina De Benedittis; Alessandra Ruggeri; Vladimir N Uversky; Anna Rita Migliaccio
Journal:  Front Cell Dev Biol       Date:  2017-11-23

9.  Metal-binding polymorphism in late embryogenesis abundant protein AtLEA4-5, an intrinsically disordered protein.

Authors:  Leidys French-Pacheco; Cesar L Cuevas-Velazquez; Lina Rivillas-Acevedo; Alejandra A Covarrubias; Carlos Amero
Journal:  PeerJ       Date:  2018-06-07       Impact factor: 2.984

Review 10.  Structural and Functional Dynamics of Dehydrins: A Plant Protector Protein under Abiotic Stress.

Authors:  Zhengyang Yu; Xin Wang; Linsheng Zhang
Journal:  Int J Mol Sci       Date:  2018-10-31       Impact factor: 5.923

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