Literature DB >> 28649706

Improving efficiency of viability-qPCR for selective detection of infectious HAV in food and water samples.

W Randazzo1,2, J Piqueras1,2, J Rodríguez-Díaz1,3, R Aznar1,2, G Sánchez1,2.   

Abstract

AIM: To improve the efficacy of intercalating dyes to distinguishing between infectious and inactivated hepatitis A virus (HAV) in food. METHODS AND
RESULTS: Different intercalating dyes were evaluated for the discrimination between infectious and thermally inactivated HAV suspensions combining with the RT-qPCR proposed in the ISO 15216. Among them, PMAxx was the best dye in removing the RT-qPCR signal from inactivated HAV. Applied to lettuce and spinach, PMAxx-Triton pretreatment resulted in complete removal of the RT-qPCR signal from inactivated HAV. Likewise, this study demonstrates that this pretreatment is suitable for the discrimination of inactivated HAV in shellfish without further sample dilution. In mussels and oysters, the developed viability RT-qPCR method reduced the signal of inactivated HAV between 1·7 and 2·2 logs at high inoculation level, and signal was completely removed at low inoculation level.
CONCLUSIONS: This study showed that the use of PMAxx is an important improvement to assess HAV infectivity by RT-qPCR. It was shown that PMAxx-Triton pretreatment is suitable for the analysis of infectious HAV in complex food samples such as vegetables and shellfish. SIGNIFICANCE AND IMPACT OF THE STUDY: The PMAxx-Triton pretreatment can be easily incorporated to the ISO norm for infectious virus detection.
© 2017 The Society for Applied Microbiology.

Entities:  

Keywords:  food; hepatitis A virus; viability PCR; water

Mesh:

Substances:

Year:  2017        PMID: 28649706     DOI: 10.1111/jam.13519

Source DB:  PubMed          Journal:  J Appl Microbiol        ISSN: 1364-5072            Impact factor:   3.772


  15 in total

1.  Development of a New Application for Comprehensive Viability Analysis Based on Microbiome Analysis by Next-Generation Sequencing: Insights into Staphylococcal Carriage in Human Nasal Cavities.

Authors:  Yu Jie Lu; Takashi Sasaki; Kyoko Kuwahara-Arai; Yuki Uehara; Keiichi Hiramatsu
Journal:  Appl Environ Microbiol       Date:  2018-05-17       Impact factor: 4.792

2.  Interlaboratory Comparative Study to Detect Potentially Infectious Human Enteric Viruses in Influent and Effluent Waters.

Authors:  Walter Randazzo; Joaquín Piqueras; Zoran Evtoski; Guadalupe Sastre; Raquel Sancho; Carina Gonzalez; Gloria Sánchez
Journal:  Food Environ Virol       Date:  2019-06-01       Impact factor: 2.778

3.  Optimisation of a PMAxx™-RT-qPCR Assay and the Preceding Extraction Method to Selectively Detect Infectious Murine Norovirus Particles in Mussels.

Authors:  Ravo M Razafimahefa; Louisa F Ludwig-Begall; Françoise S Le Guyader; Frédéric Farnir; Axel Mauroy; Etienne Thiry
Journal:  Food Environ Virol       Date:  2021-01-03       Impact factor: 2.778

4.  Evaluation of propidium monoazide-based qPCR to detect viable oocysts of Toxoplasma gondii.

Authors:  Angélique Rousseau; Isabelle Villena; Aurélien Dumètre; Sandie Escotte-Binet; Loïc Favennec; Jitender P Dubey; Dominique Aubert; Stéphanie La Carbona
Journal:  Parasitol Res       Date:  2019-02-07       Impact factor: 2.289

5.  Attractive study of the antimicrobial, antiviral, and cytotoxic activity of novel synthesized silver chromite nanocomposites.

Authors:  Mohsen A Sayed; Tahany M A Abd El-Rahman; H K Abdelsalam; Ahmed M Ali; Mayar M Hamdy; Yara A Badr; Nada H Abd El- Rahman; Sabah M Abd El-Latif; Sara H Mostafa; Sondos S Mohamed; Ziad M Ali; Asmaa A H El-Bassuony
Journal:  BMC Chem       Date:  2022-05-27

6.  Viability RT-qPCR to Distinguish Between HEV and HAV With Intact and Altered Capsids.

Authors:  Walter Randazzo; Andrea Vasquez-García; Rosa Aznar; Gloria Sánchez
Journal:  Front Microbiol       Date:  2018-08-24       Impact factor: 5.640

Review 7.  Assessing the Occurrence of Waterborne Viruses in Reuse Systems: Analytical Limits and Needs.

Authors:  Charles P Gerba; Walter Q Betancourt
Journal:  Pathogens       Date:  2019-07-22

8.  Detection of Clavibacter michiganensis subsp. michiganensis in viable but nonculturable state from tomato seed using improved qPCR.

Authors:  Sining Han; Na Jiang; Qingyang Lv; Yumin Kan; Jianjun Hao; Jianqiang Li; Laixin Luo
Journal:  PLoS One       Date:  2018-05-03       Impact factor: 3.240

9.  An in vitro protocol for rapidly assessing the effects of antimicrobial compounds on the unculturable bacterial plant pathogen, Candidatus Liberibacter asiaticus.

Authors:  Joseph Krystel; Qingchun Shi; Jefferson Shaw; Goutam Gupta; David Hall; Ed Stover
Journal:  Plant Methods       Date:  2019-07-31       Impact factor: 4.993

10.  Discrimination of non-infectious SARS-CoV-2 particles from fomites by viability RT-qPCR.

Authors:  Enric Cuevas-Ferrando; Inés Girón-Guzmán; Irene Falcó; Alba Pérez-Cataluña; Azahara Díaz-Reolid; Rosa Aznar; Walter Randazzo; Gloria Sánchez
Journal:  Environ Res       Date:  2021-08-02       Impact factor: 6.498

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