Literature DB >> 28648284

Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma.

Jittiporn Chaisaingmongkol1, Anuradha Budhu2, Hien Dang2, Siritida Rabibhadana3, Benjarath Pupacdi3, So Mee Kwon2, Marshonna Forgues2, Yotsawat Pomyen4, Vajarabhongsa Bhudhisawasdi5, Nirush Lertprasertsuke6, Anon Chotirosniramit6, Chawalit Pairojkul5, Chirayu U Auewarakul7, Thaniya Sricharunrat8, Kannika Phornphutkul9, Suleeporn Sangrajrang10, Maggie Cam11, Ping He12, Stephen M Hewitt13, Kris Ylaya13, Xiaolin Wu14, Jesper B Andersen15, Snorri S Thorgeirsson2, Joshua J Waterfall16, Yuelin J Zhu16, Jennifer Walling16, Holly S Stevenson16, Daniel Edelman16, Paul S Meltzer16, Christopher A Loffredo17, Natsuko Hama18, Tatsuhiro Shibata19, Robert H Wiltrout20, Curtis C Harris2, Chulabhorn Mahidol21, Mathuros Ruchirawat22, Xin W Wang23.   

Abstract

Intrahepatic cholangiocarcinoma (ICC) and hepatocellular carcinoma (HCC) are clinically disparate primary liver cancers with etiological and biological heterogeneity. We identified common molecular subtypes linked to similar prognosis among 199 Thai ICC and HCC patients through systems integration of genomics, transcriptomics, and metabolomics. While ICC and HCC share recurrently mutated genes, including TP53, ARID1A, and ARID2, mitotic checkpoint anomalies distinguish the C1 subtype with key drivers PLK1 and ECT2, whereas the C2 subtype is linked to obesity, T cell infiltration, and bile acid metabolism. These molecular subtypes are found in 582 Asian, but less so in 265 Caucasian patients. Thus, Asian ICC and HCC, while clinically treated as separate entities, share common molecular subtypes with similar actionable drivers to improve precision therapy. Published by Elsevier Inc.

Entities:  

Keywords:  TIGER-LC; cancer driver; cancer genomics; hepatocellular carcinoma; integrated genomics; intrahepatic cholangiocarcinoma; liver cancer; metabolomics; molecular subtypes; transcriptomics

Mesh:

Year:  2017        PMID: 28648284      PMCID: PMC5524207          DOI: 10.1016/j.ccell.2017.05.009

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  58 in total

1.  Genomic spectra of biliary tract cancer.

Authors:  Hiromi Nakamura; Yasuhito Arai; Yasushi Totoki; Tomoki Shirota; Asmaa Elzawahry; Mamoru Kato; Natsuko Hama; Fumie Hosoda; Tomoko Urushidate; Shoko Ohashi; Nobuyoshi Hiraoka; Hidenori Ojima; Kazuaki Shimada; Takuji Okusaka; Tomoo Kosuge; Shinichi Miyagawa; Tatsuhiro Shibata
Journal:  Nat Genet       Date:  2015-08-10       Impact factor: 38.330

2.  Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.

Authors:  Daniela Sia; Yujin Hoshida; Augusto Villanueva; Sasan Roayaie; Joana Ferrer; Barbara Tabak; Judit Peix; Manel Sole; Victoria Tovar; Clara Alsinet; Helena Cornella; Brandy Klotzle; Jian-Bing Fan; Christian Cotsoglou; Swan N Thung; Josep Fuster; Samuel Waxman; Juan Carlos Garcia-Valdecasas; Jordi Bruix; Myron E Schwartz; Rameen Beroukhim; Vincenzo Mazzaferro; Josep M Llovet
Journal:  Gastroenterology       Date:  2013-01-04       Impact factor: 22.682

3.  Phosphorylation of the cytokinesis regulator ECT2 at G2/M phase stimulates association of the mitotic kinase Plk1 and accumulation of GTP-bound RhoA.

Authors:  F Niiya; T Tatsumoto; K S Lee; T Miki
Journal:  Oncogene       Date:  2006-02-09       Impact factor: 9.867

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  Metabolic syndrome increases the risk of primary liver cancer in the United States: a study in the SEER-Medicare database.

Authors:  Tania M Welzel; Barry I Graubard; Stefan Zeuzem; Hashem B El-Serag; Jessica A Davila; Katherine A McGlynn
Journal:  Hepatology       Date:  2011-06-30       Impact factor: 17.425

6.  Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response.

Authors:  Stefano Monti; Kerry J Savage; Jeffery L Kutok; Friedrich Feuerhake; Paul Kurtin; Martin Mihm; Bingyan Wu; Laura Pasqualucci; Donna Neuberg; Ricardo C T Aguiar; Paola Dal Cin; Christine Ladd; Geraldine S Pinkus; Gilles Salles; Nancy Lee Harris; Riccardo Dalla-Favera; Thomas M Habermann; Jon C Aster; Todd R Golub; Margaret A Shipp
Journal:  Blood       Date:  2004-11-18       Impact factor: 22.113

7.  Overweight, obesity, and mortality from cancer in a prospectively studied cohort of U.S. adults.

Authors:  Eugenia E Calle; Carmen Rodriguez; Kimberly Walker-Thurmond; Michael J Thun
Journal:  N Engl J Med       Date:  2003-04-24       Impact factor: 91.245

8.  The expression of phospho-AKT, phospho-mTOR, and PTEN in extrahepatic cholangiocarcinoma.

Authors:  Joon-Yong Chung; Seung-Mo Hong; Byeong Yeob Choi; Hyungjun Cho; Eunsil Yu; Stephen M Hewitt
Journal:  Clin Cancer Res       Date:  2009-01-15       Impact factor: 12.531

9.  EpCAM and alpha-fetoprotein expression defines novel prognostic subtypes of hepatocellular carcinoma.

Authors:  Taro Yamashita; Marshonna Forgues; Wei Wang; Jin Woo Kim; Qinghai Ye; Huliang Jia; Anuradha Budhu; Krista A Zanetti; Yidong Chen; Lun-Xiu Qin; Zhao-You Tang; Xin Wei Wang
Journal:  Cancer Res       Date:  2008-03-01       Impact factor: 12.701

10.  Subclass mapping: identifying common subtypes in independent disease data sets.

Authors:  Yujin Hoshida; Jean-Philippe Brunet; Pablo Tamayo; Todd R Golub; Jill P Mesirov
Journal:  PLoS One       Date:  2007-11-21       Impact factor: 3.240

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  129 in total

1.  Genomic and Transcriptomic Profiling of Combined Hepatocellular and Intrahepatic Cholangiocarcinoma Reveals Distinct Molecular Subtypes.

Authors:  Ruidong Xue; Lu Chen; Chong Zhang; Masashi Fujita; Ruoyan Li; Shu-Mei Yan; Choon Kiat Ong; Xiwen Liao; Qiang Gao; Shota Sasagawa; Yanmeng Li; Jincheng Wang; Hua Guo; Qi-Tao Huang; Qian Zhong; Jing Tan; Lisha Qi; Wenchen Gong; Zhixian Hong; Meng Li; Jingmin Zhao; Tao Peng; Yinying Lu; Kiat Hon Tony Lim; Arnoud Boot; Atushi Ono; Kazuaki Chayama; Zemin Zhang; Steve George Rozen; Bin Tean Teh; Xin Wei Wang; Hidewaki Nakagawa; Mu-Sheng Zeng; Fan Bai; Ning Zhang
Journal:  Cancer Cell       Date:  2019-05-23       Impact factor: 31.743

2.  Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma.

Authors:  Hongping Zheng; Yotsawat Pomyen; Maria Olga Hernandez; Caiyi Li; Ferenc Livak; Wei Tang; Hien Dang; Tim F Greten; Jeremy L Davis; Yongmei Zhao; Monika Mehta; Yelena Levin; Jyoti Shetty; Bao Tran; Anuradha Budhu; Xin Wei Wang
Journal:  Hepatology       Date:  2018-05-09       Impact factor: 17.425

Review 3.  Cholangiocarcinoma 2020: the next horizon in mechanisms and management.

Authors:  Jesus M Banales; Jose J G Marin; Angela Lamarca; Pedro M Rodrigues; Shahid A Khan; Lewis R Roberts; Vincenzo Cardinale; Guido Carpino; Jesper B Andersen; Chiara Braconi; Diego F Calvisi; Maria J Perugorria; Luca Fabris; Luke Boulter; Rocio I R Macias; Eugenio Gaudio; Domenico Alvaro; Sergio A Gradilone; Mario Strazzabosco; Marco Marzioni; Cédric Coulouarn; Laura Fouassier; Chiara Raggi; Pietro Invernizzi; Joachim C Mertens; Anja Moncsek; Sumera Rizvi; Julie Heimbach; Bas Groot Koerkamp; Jordi Bruix; Alejandro Forner; John Bridgewater; Juan W Valle; Gregory J Gores
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-06-30       Impact factor: 46.802

Review 4.  Genomic Medicine and Implications for Hepatocellular Carcinoma Prevention and Therapy.

Authors:  Renumathy Dhanasekaran; Jean-Charles Nault; Lewis R Roberts; Jessica Zucman-Rossi
Journal:  Gastroenterology       Date:  2018-11-04       Impact factor: 22.682

5.  Hepatitis B virus X protein promotes DNA damage propagation through disruption of liver polyploidization and enhances hepatocellular carcinoma initiation.

Authors:  James Ahodantin; Myriam Bou-Nader; Corinne Cordier; Jérôme Mégret; Patrick Soussan; Chantal Desdouets; Dina Kremsdorf
Journal:  Oncogene       Date:  2018-12-11       Impact factor: 9.867

6.  Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma.

Authors:  Chirag Nepal; Colm J O'Rourke; Douglas V N P Oliveira; Andrzej Taranta; Steven Shema; Prson Gautam; Julien Calderaro; Andrew Barbour; Chiara Raggi; Krister Wennerberg; Xin W Wang; Anja Lautem; Lewis R Roberts; Jesper B Andersen
Journal:  Hepatology       Date:  2018-06-12       Impact factor: 17.425

7.  A tumorigenic index for quantitative analysis of liver cancer initiation and progression.

Authors:  Gaowei Wang; Xiaolin Luo; Yan Liang; Kota Kaneko; Hairi Li; Xiang-Dong Fu; Gen-Sheng Feng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-16       Impact factor: 11.205

8.  Single cell profiling reveals window for immunotherapy in liver cancers.

Authors:  Jesper B Andersen
Journal:  Hepatobiliary Surg Nutr       Date:  2018-02       Impact factor: 7.293

9.  Urinary Metabolites Diagnostic and Prognostic of Intrahepatic Cholangiocarcinoma.

Authors:  Christopher M Diehl; Amelia L Parker; Majda Haznadar; Kristopher W Krausz; Elise D Bowman; Siritida Rabibhadana; Marshonna Forgues; Vajarabhongsa Bhudhisawasdi; Frank J Gonzalez; Chulabhorn Mahidol; Anuradha Budhu; Xin W Wang; Mathuros Ruchirawat; Curtis C Harris
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-07-29       Impact factor: 4.254

10.  The Histone Methyltransferase G9a Promotes Cholangiocarcinogenesis Through Regulation of the Hippo Pathway Kinase LATS2 and YAP Signaling Pathway.

Authors:  Wenbo Ma; Chang Han; Jinqiang Zhang; Kyoungsub Song; Weina Chen; Hyunjoo Kwon; Tong Wu
Journal:  Hepatology       Date:  2020-10-09       Impact factor: 17.425

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