Literature DB >> 28646678

Bioengineering for intestinal organoid cultures.

Ge-Ah Kim1, Jason R Spence2, Shuichi Takayama3.   

Abstract

Recent advances allow access to human cell-based intestinal organoids that recreate human physiology to levels not possible with conventional 2D cell cultures. Despite their huge potential, there are many challenges that remain. This review will cover recent bioengineering approaches to improve organoid maturation, scale up, reproducibility and analysis. The first section covers the advances in engineering the culture environment, followed by the section on tools for micro-manipulation and analysis of organoids. The last section reviews the computational models developed to guide the use of engineered materials and tools, and to interpret observed results as well. The ability to use organoids for discovery research, and the need to both exert exquisite experimental control and obtain quantitative measurements from organoid models means that the field is ripe for collaborative efforts between biologists, engineers, clinicians and industry.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28646678      PMCID: PMC5617775          DOI: 10.1016/j.copbio.2017.05.006

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   10.279


  51 in total

Review 1.  Gut instincts: thoughts on intestinal epithelial stem cells.

Authors:  C Booth; C S Potten
Journal:  J Clin Invest       Date:  2000-06       Impact factor: 14.808

2.  Microscale 3-D hydrogel scaffold for biomimetic gastrointestinal (GI) tract model.

Authors:  Jong Hwan Sung; Jiajie Yu; Dan Luo; Michael L Shuler; John C March
Journal:  Lab Chip       Date:  2010-12-15       Impact factor: 6.799

3.  Scaffold fabrication by indirect three-dimensional printing.

Authors:  Min Lee; James C Y Dunn; Benjamin M Wu
Journal:  Biomaterials       Date:  2005-07       Impact factor: 12.479

4.  Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.

Authors:  Toshiro Sato; Robert G Vries; Hugo J Snippert; Marc van de Wetering; Nick Barker; Daniel E Stange; Johan H van Es; Arie Abo; Pekka Kujala; Peter J Peters; Hans Clevers
Journal:  Nature       Date:  2009-03-29       Impact factor: 49.962

5.  Influence of micro-well biomimetic topography on intestinal epithelial Caco-2 cell phenotype.

Authors:  Lin Wang; Shashi K Murthy; William H Fowle; Gilda A Barabino; Rebecca L Carrier
Journal:  Biomaterials       Date:  2009-09-19       Impact factor: 12.479

6.  Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium.

Authors:  Toshiro Sato; Daniel E Stange; Marc Ferrante; Robert G J Vries; Johan H Van Es; Stieneke Van den Brink; Winan J Van Houdt; Apollo Pronk; Joost Van Gorp; Peter D Siersema; Hans Clevers
Journal:  Gastroenterology       Date:  2011-09-02       Impact factor: 22.682

7.  Isolation and in vitro expansion of human colonic stem cells.

Authors:  Peter Jung; Toshiro Sato; Anna Merlos-Suárez; Francisco M Barriga; Mar Iglesias; David Rossell; Herbert Auer; Mercedes Gallardo; Maria A Blasco; Elena Sancho; Hans Clevers; Eduard Batlle
Journal:  Nat Med       Date:  2011-09-04       Impact factor: 53.440

8.  Crypt fission peaks early during infancy and crypt hyperplasia broadly peaks during infancy and childhood in the small intestine of humans.

Authors:  Adrian G Cummins; Anthony G Catto-Smith; Donald J Cameron; Richard T Couper; Geoffrey P Davidson; Andrew S Day; Paul D Hammond; David J Moore; Fiona M Thompson
Journal:  J Pediatr Gastroenterol Nutr       Date:  2008-08       Impact factor: 2.839

9.  Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche.

Authors:  Akifumi Ootani; Xingnan Li; Eugenio Sangiorgi; Quoc T Ho; Hiroo Ueno; Shuji Toda; Hajime Sugihara; Kazuma Fujimoto; Irving L Weissman; Mario R Capecchi; Calvin J Kuo
Journal:  Nat Med       Date:  2009-04-27       Impact factor: 53.440

10.  Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro.

Authors:  Jason R Spence; Christopher N Mayhew; Scott A Rankin; Matthew F Kuhar; Jefferson E Vallance; Kathryn Tolle; Elizabeth E Hoskins; Vladimir V Kalinichenko; Susanne I Wells; Aaron M Zorn; Noah F Shroyer; James M Wells
Journal:  Nature       Date:  2010-12-12       Impact factor: 49.962

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  8 in total

Review 1.  Intestinal organoids in infants and children.

Authors:  Sinobol Chusilp; Bo Li; Dorothy Lee; Carol Lee; Paisarn Vejchapipat; Agostino Pierro
Journal:  Pediatr Surg Int       Date:  2019-09-25       Impact factor: 1.827

2.  Preparation of Biological Scaffolds and Primary Intestinal Epithelial Cells to Efficiently 3D Model the Fish Intestinal Mucosa.

Authors:  Nicole Verdile; Anna Szabó; Rolando Pasquariello; Tiziana A L Brevini; Sandra Van Vlierberghe; Fulvio Gandolfi
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Biomaterials-Based Approaches to Tumor Spheroid and Organoid Modeling.

Authors:  Pradip Shahi Thakuri; Chun Liu; Gary D Luker; Hossein Tavana
Journal:  Adv Healthc Mater       Date:  2017-12-04       Impact factor: 9.933

4.  Drivers of transcriptional variance in human intestinal epithelial organoids.

Authors:  Zachary K Criss; Nobel Bhasin; Sara C Di Rienzi; Anubama Rajan; Kali Deans-Fielder; Ganesh Swaminathan; Nabiollah Kamyabi; Xi-Lei Zeng; Harsha Doddapaneni; Vipin K Menon; Deepavali Chakravarti; Clarissa Estrella; Xiaomin Yu; Ketki Patil; Joseph F Petrosino; James C Fleet; Michael P Verzi; Sylvia Christakos; Michael A Helmrath; Sumimasa Arimura; Ronald A DePinho; Robert A Britton; Anthony W Maresso; K Jane Grande-Allen; Sarah E Blutt; Sue E Crawford; Mary K Estes; Sasirekha Ramani; Noah F Shroyer
Journal:  Physiol Genomics       Date:  2021-10-06       Impact factor: 3.107

Review 5.  In Vitro 3D Cultures to Reproduce the Bone Marrow Niche.

Authors:  Justin Ham; Lauren Lever; Maura Fox; Michaela R Reagan
Journal:  JBMR Plus       Date:  2019-10-01

Review 6.  Harnessing the Biology of Canine Intestinal Organoids to Heighten Understanding of Inflammatory Bowel Disease Pathogenesis and Accelerate Drug Discovery: A One Health Approach.

Authors:  Jamie J Kopper; Chelsea Iennarella-Servantez; Albert E Jergens; Dipak K Sahoo; Emilie Guillot; Agnes Bourgois-Mochel; Marilyn N Martinez; Karin Allenspach; Jonathan P Mochel
Journal:  Front Toxicol       Date:  2021-11-10

Review 7.  Schistosoma "Eggs-Iting" the Host: Granuloma Formation and Egg Excretion.

Authors:  Christian Schwartz; Padraic G Fallon
Journal:  Front Immunol       Date:  2018-10-29       Impact factor: 7.561

8.  Self-Organizing Human Induced Pluripotent Stem Cell Hepatocyte 3D Organoids Inform the Biology of the Pleiotropic TRIB1 Gene.

Authors:  Deepti Abbey; Susannah Elwyn; Nicholas J Hand; Kiran Musunuru; Daniel J Rader
Journal:  Hepatol Commun       Date:  2020-07-08
  8 in total

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