Literature DB >> 28645842

OpenNFT: An open-source Python/Matlab framework for real-time fMRI neurofeedback training based on activity, connectivity and multivariate pattern analysis.

Yury Koush1, John Ashburner2, Evgeny Prilepin3, Ronald Sladky4, Peter Zeidman2, Sergei Bibikov5, Frank Scharnowski4, Artem Nikonorov6, Dimitri Van De Ville7.   

Abstract

Neurofeedback based on real-time functional magnetic resonance imaging (rt-fMRI) is a novel and rapidly developing research field. It allows for training of voluntary control over localized brain activity and connectivity and has demonstrated promising clinical applications. Because of the rapid technical developments of MRI techniques and the availability of high-performance computing, new methodological advances in rt-fMRI neurofeedback become possible. Here we outline the core components of a novel open-source neurofeedback framework, termed Open NeuroFeedback Training (OpenNFT), which efficiently integrates these new developments. This framework is implemented using Python and Matlab source code to allow for diverse functionality, high modularity, and rapid extendibility of the software depending on the user's needs. In addition, it provides an easy interface to the functionality of Statistical Parametric Mapping (SPM) that is also open-source and one of the most widely used fMRI data analysis software. We demonstrate the functionality of our new framework by describing case studies that include neurofeedback protocols based on brain activity levels, effective connectivity models, and pattern classification approaches. This open-source initiative provides a suitable framework to actively engage in the development of novel neurofeedback approaches, so that local methodological developments can be easily made accessible to a wider range of users.
Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Keywords:  Activity; Connectivity; Multivariate pattern analysis; Neurofeedback; OpenNFT; Real-time fMRI

Mesh:

Year:  2017        PMID: 28645842     DOI: 10.1016/j.neuroimage.2017.06.039

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  17 in total

1.  RT-Cloud: A cloud-based software framework to simplify and standardize real-time fMRI.

Authors:  Grant Wallace; Stephen Polcyn; Paula P Brooks; Anne C Mennen; Ke Zhao; Paul S Scotti; Sebastian Michelmann; Kai Li; Nicholas B Turk-Browne; Jonathan D Cohen; Kenneth A Norman
Journal:  Neuroimage       Date:  2022-05-14       Impact factor: 7.400

2.  Real-time and Recursive Estimators for Functional MRI Quality Assessment.

Authors:  Nikita Davydov; Lucas Peek; Tibor Auer; Evgeny Prilepin; Nicolas Gninenko; Dimitri Van De Ville; Artem Nikonorov; Yury Koush
Journal:  Neuroinformatics       Date:  2022-03-17

Review 3.  Treatment strategies for ADHD: an evidence-based guide to select optimal treatment.

Authors:  Arthur Caye; James M Swanson; David Coghill; Luis Augusto Rohde
Journal:  Mol Psychiatry       Date:  2018-06-28       Impact factor: 15.992

4.  Real-Time Resting-State Functional Magnetic Resonance Imaging Using Averaged Sliding Windows with Partial Correlations and Regression of Confounding Signals.

Authors:  Kishore Vakamudi; Cameron Trapp; Khaled Talaat; Kunxiu Gao; Bruno Sa De La Rocque Guimaraes; Stefan Posse
Journal:  Brain Connect       Date:  2020-10-08

Review 5.  The efficacy of real-time functional magnetic resonance imaging neurofeedback for psychiatric illness: A meta-analysis of brain and behavioral outcomes.

Authors:  Emily Dudek; David Dodell-Feder
Journal:  Neurosci Biobehav Rev       Date:  2020-12-25       Impact factor: 8.989

6.  Real-time fMRI data for testing OpenNFT functionality.

Authors:  Yury Koush; John Ashburner; Evgeny Prilepin; Ronald Sladky; Peter Zeidman; Sergei Bibikov; Frank Scharnowski; Artem Nikonorov; Dimitri Van De Ville
Journal:  Data Brief       Date:  2017-07-26

7.  Individual differences in rate of acquiring stable neural representations of tasks in fMRI.

Authors:  Ming-Hua Chung; Bradford Martins; Anthony Privratsky; G Andrew James; Clint D Kilts; Keith A Bush
Journal:  PLoS One       Date:  2018-11-26       Impact factor: 3.240

8.  No time for drifting: Comparing performance and applicability of signal detrending algorithms for real-time fMRI.

Authors:  R Kopel; R Sladky; P Laub; Y Koush; F Robineau; C Hutton; N Weiskopf; P Vuilleumier; D Van De Ville; F Scharnowski
Journal:  Neuroimage       Date:  2019-02-25       Impact factor: 6.556

9.  Conducting decoded neurofeedback studies.

Authors:  Vincent Taschereau-Dumouchel; Aurelio Cortese; Hakwan Lau; Mitsuo Kawato
Journal:  Soc Cogn Affect Neurosci       Date:  2021-08-06       Impact factor: 3.436

Review 10.  Quality and denoising in real-time functional magnetic resonance imaging neurofeedback: A methods review.

Authors:  Stephan Heunis; Rolf Lamerichs; Svitlana Zinger; Cesar Caballero-Gaudes; Jacobus F A Jansen; Bert Aldenkamp; Marcel Breeuwer
Journal:  Hum Brain Mapp       Date:  2020-04-25       Impact factor: 5.038

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