Literature DB >> 28642629

Improved brain tumor segmentation by utilizing tumor growth model in longitudinal brain MRI.

Linmin Pei1, Syed M S Reza1, Wei Li2, Christos Davatzikos3, Khan M Iftekharuddin1.   

Abstract

In this work, we propose a novel method to improve texture based tumor segmentation by fusing cell density patterns that are generated from tumor growth modeling. In order to model tumor growth, we solve the reaction-diffusion equation by using Lattice-Boltzmann method (LBM). Computational tumor growth modeling obtains the cell density distribution that potentially indicates the predicted tissue locations in the brain over time. The density patterns is then considered as novel features along with other texture (such as fractal, and multifractal Brownian motion (mBm)), and intensity features in MRI for improved brain tumor segmentation. We evaluate the proposed method with about one hundred longitudinal MRI scans from five patients obtained from public BRATS 2015 data set, validated by the ground truth. The result shows significant improvement of complete tumor segmentation using ANOVA analysis for five patients in longitudinal MR images.

Entities:  

Keywords:  Lattice-Boltzmann method; Tumor segmentation; cell density; longitudinal MRI; reaction-diffusion equation; tumor growth model

Year:  2017        PMID: 28642629      PMCID: PMC5476314          DOI: 10.1117/12.2254034

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  7 in total

1.  Multifractal texture estimation for detection and segmentation of brain tumors.

Authors:  Atiq Islam; Syed M S Reza; Khan M Iftekharuddin
Journal:  IEEE Trans Biomed Eng       Date:  2013-06-27       Impact factor: 4.538

2.  Multi-atlas segmentation without registration: a supervoxel-based approach.

Authors:  Hongzhi Wang; Paul A Yushkevich
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

3.  Brain tumor segmentation based on local independent projection-based classification.

Authors:  Meiyan Huang; Wei Yang; Yao Wu; Jun Jiang; Wufan Chen; Qianjin Feng
Journal:  IEEE Trans Biomed Eng       Date:  2014-05-19       Impact factor: 4.538

4.  Combining generative models for multifocal glioma segmentation and registration.

Authors:  Dongjin Kwon; Russell T Shinohara; Hamed Akbari; Christos Davatzikos
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

5.  Tumor growth prediction with reaction-diffusion and hyperelastic biomechanical model by physiological data fusion.

Authors:  Ken C L Wong; Ronald M Summers; Electron Kebebew; Jianhua Yao
Journal:  Med Image Anal       Date:  2015-04-17       Impact factor: 8.545

6.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

7.  GLISTR: glioma image segmentation and registration.

Authors:  Ali Gooya; Kilian M Pohl; Michel Bilello; Luigi Cirillo; George Biros; Elias R Melhem; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2012-08-13       Impact factor: 10.048

  7 in total
  3 in total

1.  A general skull stripping of multiparametric brain MRIs using 3D convolutional neural network.

Authors:  Linmin Pei; Murat Ak; Nourel Hoda M Tahon; Serafettin Zenkin; Safa Alkarawi; Abdallah Kamal; Mahir Yilmaz; Lingling Chen; Mehmet Er; Nursima Ak; Rivka Colen
Journal:  Sci Rep       Date:  2022-06-27       Impact factor: 4.996

2.  Context aware deep learning for brain tumor segmentation, subtype classification, and survival prediction using radiology images.

Authors:  Linmin Pei; Lasitha Vidyaratne; Md Monibor Rahman; Khan M Iftekharuddin
Journal:  Sci Rep       Date:  2020-11-12       Impact factor: 4.379

3.  A Fully Automated Deep Learning Network for Brain Tumor Segmentation.

Authors:  Chandan Ganesh Bangalore Yogananda; Bhavya R Shah; Maryam Vejdani-Jahromi; Sahil S Nalawade; Gowtham K Murugesan; Frank F Yu; Marco C Pinho; Benjamin C Wagner; Kyrre E Emblem; Atle Bjørnerud; Baowei Fei; Ananth J Madhuranthakam; Joseph A Maldjian
Journal:  Tomography       Date:  2020-06
  3 in total

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