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Literature DB >> 28642063

Differential gene network analysis from single cell RNA-seq.

Yikai Wang¹, Hao Wu², Tianwei Yu³.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Year: 2017 PMID： 28642063 PMCID： PMC5937712 DOI： 10.1016/j.jgg.2017.03.001

Source DB: PubMed Journal: J Genet Genomics ISSN： 1673-8527 Impact factor: 4.275

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15 in total

1. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.

Authors: Korbinian Strimmer
Journal: Bioinformatics Date: 2008-04-25 Impact factor: 6.937

2. Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.

Authors: Sean C Bendall; Kara L Davis; El-Ad David Amir; Michelle D Tadmor; Erin F Simonds; Tiffany J Chen; Daniel K Shenfeld; Garry P Nolan; Dana Pe'er
Journal: Cell Date: 2014-04-24 Impact factor: 41.582

3. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.

Authors: Amit Zeisel; Ana B Muñoz-Manchado; Simone Codeluppi; Peter Lönnerberg; Gioele La Manno; Anna Juréus; Sueli Marques; Hermany Munguba; Liqun He; Christer Betsholtz; Charlotte Rolny; Gonçalo Castelo-Branco; Jens Hjerling-Leffler; Sten Linnarsson
Journal: Science Date: 2015-02-19 Impact factor: 47.728

4. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

Authors: Anoop P Patel; Itay Tirosh; John J Trombetta; Alex K Shalek; Shawn M Gillespie; Hiroaki Wakimoto; Daniel P Cahill; Brian V Nahed; William T Curry; Robert L Martuza; David N Louis; Orit Rozenblatt-Rosen; Mario L Suvà; Aviv Regev; Bradley E Bernstein
Journal: Science Date: 2014-06-12 Impact factor: 47.728

5. Characterization of the activation of protein tyrosine phosphatase, receptor-type, Z polypeptide 1 (PTPRZ1) by hypoxia inducible factor-2 alpha.

Authors: Victoria Wang; David A Davis; Ravindra P Veeranna; Muzammel Haque; Robert Yarchoan
Journal: PLoS One Date: 2010-03-10 Impact factor: 3.240

6. mRNA-Seq whole-transcriptome analysis of a single cell.

Authors: Fuchou Tang; Catalin Barbacioru; Yangzhou Wang; Ellen Nordman; Clarence Lee; Nanlan Xu; Xiaohui Wang; John Bodeau; Brian B Tuch; Asim Siddiqui; Kaiqin Lao; M Azim Surani
Journal: Nat Methods Date: 2009-04-06 Impact factor: 28.547

Review 7. Differential network biology.

Authors: Trey Ideker; Nevan J Krogan
Journal: Mol Syst Biol Date: 2012-01-17 Impact factor: 11.429

Differential gene network analysis from single cell RNA-seq.

1. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.

2. Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.

3. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.

4. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

5. Characterization of the activation of protein tyrosine phosphatase, receptor-type, Z polypeptide 1 (PTPRZ1) by hypoxia inducible factor-2 alpha.

6. mRNA-Seq whole-transcriptome analysis of a single cell.

Review 7. Differential network biology.

8. Single-cell chromatin accessibility reveals principles of regulatory variation.

9. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

10. Bayesian approach to single-cell differential expression analysis.

1. A hierarchical independent component analysis model for longitudinal neuroimaging studies.

2. scdNet: a computational tool for single-cell differential network analysis.

3. Kernel Differential Subgraph Analysis to Reveal the Key Period Affecting Glioblastoma.

4. Single-Cell Differential Network Analysis with Sparse Bayesian Factor Models.