| Literature DB >> 28638659 |
Julio Zukerman-Schpector1, Karinne E Prado2, Luccas L Name2, Rodrigo Cella2, Mukesh M Jotani3, Edward R T Tiekink4.
Abstract
The title organoselenium compound, C19H13ClO3Se {systematic name: 2-[(4-chloro-phen-yl)selan-yl]-2H,3H,4H,5H,6H-naphtho-[1,2-b]pyran-5,6-dione}, has the substituted 2-pyranyl ring in a half-chair conformation with the methyl-ene-C atom bound to the methine-C atom being the flap atom. The dihedral angle between the two aromatic regions of the mol-ecule is 9.96 (9)° and indicates a step-like conformation. An intra-molecular Se⋯O inter-action of 2.8122 (13) Å is noted. In the crystal, π-π contacts between naphthyl rings [inter-centroid distance = 3.7213 (12) Å] and between naphthyl and chloro-benzene rings [inter-centroid distance = 3.7715 (13) Å], along with C-Cl⋯π(chloro-benzene) contacts, lead to supra-molecular layers parallel to the ab plane, which are connected into a three-dimensional architecture via methyl-ene-C-H⋯O(carbon-yl) inter-actions. The contributions of these and other weak contacts to the Hirshfeld surface is described.Entities:
Keywords: C—Cl⋯π interactions; Hirshfeld surface analysis; crystal structure; pyran derivative; selenium
Year: 2017 PMID: 28638659 PMCID: PMC5458324 DOI: 10.1107/S2056989017007605
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Figure 2The molecular packing in (I), showing (a) a view of the supramolecular layer sustained by π–π and C—Cl⋯π interactions and (b) a view of the unit-cell contents in projection down the a axis. The π–π, C—Cl⋯π and C—H⋯O interactions are shown as purple, blue and orange dashed lines, respectively.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C14–C19 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C13—H6⋯O3i | 0.97 | 2.59 | 3.239 (2) | 125 |
| C17—Cl1⋯ | 1.74 (1) | 3.72 (1) | 4.000 (2) | 86 (1) |
Symmetry codes: (i) ; (ii) .
Figure 3Two views of the Hirshfeld surface for (I) plotted over d norm in the range −0.032 to 1.401 au.
Summary of short interatomic contacts (Å) in (I)
| Contact | distance | symmetry operation |
|---|---|---|
| H5⋯H11 | 2.27 |
|
| O2⋯H5 | 2.70 | - |
| O3⋯H9 | 2.70 | - |
| C7⋯C18 | 3.346 (3) | −1 + |
Figure 4A view of Hirshfeld surface for (I) mapped over the calculated electrostatic potential in the range −0.067 to + 0.039 au. The red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5Views of Hirshfeld surfaces mapped over the shape-index about a reference molecule, showing (a) C—H⋯O and short interatomic O⋯H/H⋯O contacts by black and red dashed lines, respectively, (b) π–π stacking interactions between naphthyl residues and between chlorobenzene and naphthyl rings by blue and yellow dotted lines, respectively and (c) C—Cl⋯π/π⋯Cl—C stacking contacts between chlorobenzene rings with black and blue dotted lines.
Figure 6(a) The full two-dimensional fingerprint plot for (I) and fingerprint plots delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) Cl⋯H/H⋯Cl, (e) C⋯C, (f) C⋯H/H⋯C, (g) C⋯Cl/Cl⋯C and (h) Cl⋯O/O⋯Cl contacts.
Percentage contributions of interatomic contacts to the Hirshfeld surfaces for (I)
| Contact | percentage contribution |
|---|---|
| H⋯H | 35.9 |
| O⋯H/H⋯O | 18.2 |
| Cl⋯H/H⋯Cl | 10.6 |
| C⋯H/H⋯C | 9.0 |
| C⋯C | 9.9 |
| Se⋯H/H⋯Se | 4.2 |
| Se⋯C/C⋯Se | 3.0 |
| C⋯Cl/Cl⋯C | 3.0 |
| C⋯O/O⋯C | 2.6 |
| Cl⋯O/O⋯Cl | 2.5 |
| Se⋯Cl/Cl⋯Se | 0.6 |
| Se⋯O/O⋯Se | 0.5 |
Figure 7View of the Hirshfeld surface mapped over curvedness highlighting the flat regions corresponding to the C2–C4/C9–C11, C3–C8 and C14–C19 rings, labelled as 1, 2 and 3, respectively, involved in π–π stacking interactions.
Summary of Se⋯O distances (Å) and C—Se—C bond angles (°) in (I)–(IV)
| Compound | Se⋯O | C—Se—C | Ref. |
|---|---|---|---|
| (I) | 2.8122 (13) | 95.62 (8) | this work |
| (II) | 2.7429 (18) | 98.43 (12) | Traar |
| (III) | 2.8760 (12) | 98.16 (8) | Woodward |
| (IV) | 2.8606 (19) | 97.41 (12) | McDonagh |
Experimental details
| Crystal data | |
| Chemical formula | C19H13ClO3Se |
|
| 403.70 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 7.3757 (3), 13.7306 (5), 16.4473 (6) |
| β (°) | 100.002 (1) |
|
| 1640.35 (11) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 2.47 |
| Crystal size (mm) | 0.40 × 0.33 × 0.27 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.484, 0.745 |
| No. of measured, independent and observed [ | 38518, 3367, 2984 |
|
| 0.031 |
| (sin θ/λ)max (Å−1) | 0.626 |
| Refinement | |
|
| 0.026, 0.068, 1.03 |
| No. of reflections | 3367 |
| No. of parameters | 217 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.36, −0.39 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C19H13ClO3Se | |
| Monoclinic, | Mo |
| Cell parameters from 9049 reflections | |
| θ = 2.5–26.3° | |
| µ = 2.47 mm−1 | |
| β = 100.002 (1)° | |
| Irregular, colourless | |
| 0.40 × 0.33 × 0.27 mm |
| Bruker APEXII CCD diffractometer | 2984 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | θmax = 26.4°, θmin = 1.9° |
| 38518 measured reflections | |
| 3367 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3367 reflections | Δρmax = 0.36 e Å−3 |
| 217 parameters | Δρmin = −0.39 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Se1 | 0.50950 (3) | 0.20340 (2) | 0.19075 (2) | 0.05076 (8) | |
| Cl1 | 0.74491 (12) | 0.48216 (7) | −0.08524 (6) | 0.0988 (3) | |
| O1 | 0.14227 (17) | 0.24860 (9) | 0.12331 (8) | 0.0427 (3) | |
| O2 | −0.2776 (2) | −0.07713 (12) | 0.09235 (12) | 0.0741 (5) | |
| O3 | −0.0776 (2) | −0.03054 (10) | 0.24246 (10) | 0.0628 (4) | |
| C1 | 0.2739 (3) | 0.26958 (13) | 0.19618 (12) | 0.0429 (4) | |
| H9 | 0.2967 | 0.3399 | 0.1975 | 0.051* | |
| C2 | 0.0406 (2) | 0.16654 (12) | 0.12272 (11) | 0.0362 (4) | |
| C3 | −0.0687 (2) | 0.14639 (13) | 0.04065 (11) | 0.0389 (4) | |
| C4 | −0.1805 (2) | 0.06325 (14) | 0.02911 (12) | 0.0432 (4) | |
| C5 | −0.2841 (3) | 0.04307 (17) | −0.04809 (13) | 0.0563 (5) | |
| H4 | −0.3567 | −0.0127 | −0.0558 | 0.068* | |
| C6 | −0.2792 (3) | 0.1060 (2) | −0.11328 (13) | 0.0644 (6) | |
| H3 | −0.3499 | 0.0930 | −0.1647 | 0.077* | |
| C7 | −0.1698 (3) | 0.18762 (19) | −0.10224 (13) | 0.0601 (6) | |
| H2 | −0.1675 | 0.2297 | −0.1464 | 0.072* | |
| C8 | −0.0625 (3) | 0.20824 (16) | −0.02611 (12) | 0.0491 (5) | |
| H1 | 0.0129 | 0.2630 | −0.0197 | 0.059* | |
| C9 | −0.1868 (2) | −0.00345 (14) | 0.09908 (13) | 0.0468 (4) | |
| C10 | −0.0715 (3) | 0.02303 (13) | 0.18356 (12) | 0.0431 (4) | |
| C11 | 0.0400 (2) | 0.10986 (13) | 0.19024 (11) | 0.0387 (4) | |
| C12 | 0.1505 (3) | 0.13595 (14) | 0.27303 (11) | 0.0479 (4) | |
| H7 | 0.2611 | 0.0965 | 0.2838 | 0.057* | |
| H8 | 0.0787 | 0.1232 | 0.3160 | 0.057* | |
| C13 | 0.2018 (3) | 0.24304 (14) | 0.27349 (12) | 0.0502 (5) | |
| H6 | 0.0945 | 0.2824 | 0.2774 | 0.060* | |
| H5 | 0.2952 | 0.2568 | 0.3214 | 0.060* | |
| C14 | 0.5784 (2) | 0.28761 (13) | 0.10819 (12) | 0.0433 (4) | |
| C15 | 0.7139 (3) | 0.35717 (15) | 0.13040 (13) | 0.0508 (5) | |
| H13 | 0.7709 | 0.3629 | 0.1853 | 0.061* | |
| C16 | 0.7646 (3) | 0.41802 (17) | 0.07156 (16) | 0.0599 (6) | |
| H12 | 0.8567 | 0.4642 | 0.0862 | 0.072* | |
| C17 | 0.6774 (3) | 0.40953 (17) | −0.00896 (15) | 0.0587 (5) | |
| C18 | 0.5413 (3) | 0.3415 (2) | −0.03203 (14) | 0.0617 (6) | |
| H11 | 0.4824 | 0.3374 | −0.0867 | 0.074* | |
| C19 | 0.4930 (3) | 0.27935 (17) | 0.02638 (13) | 0.0527 (5) | |
| H10 | 0.4034 | 0.2320 | 0.0110 | 0.063* |
| Se1 | 0.04595 (13) | 0.04744 (13) | 0.05540 (14) | 0.00547 (8) | −0.00095 (9) | 0.00375 (9) |
| Cl1 | 0.0924 (5) | 0.1005 (6) | 0.1134 (6) | 0.0119 (4) | 0.0452 (5) | 0.0443 (5) |
| O1 | 0.0412 (6) | 0.0388 (7) | 0.0471 (7) | −0.0011 (5) | 0.0046 (5) | 0.0103 (6) |
| O2 | 0.0652 (10) | 0.0486 (9) | 0.0975 (13) | −0.0140 (8) | −0.0167 (9) | 0.0100 (9) |
| O3 | 0.0868 (11) | 0.0421 (8) | 0.0603 (9) | −0.0118 (7) | 0.0148 (8) | 0.0101 (7) |
| C1 | 0.0477 (10) | 0.0305 (8) | 0.0495 (10) | 0.0001 (7) | 0.0056 (8) | −0.0003 (7) |
| C2 | 0.0341 (8) | 0.0329 (8) | 0.0423 (9) | 0.0067 (7) | 0.0089 (7) | 0.0021 (7) |
| C3 | 0.0326 (8) | 0.0434 (10) | 0.0416 (9) | 0.0118 (7) | 0.0088 (7) | 0.0006 (7) |
| C4 | 0.0345 (9) | 0.0446 (10) | 0.0495 (10) | 0.0117 (7) | 0.0048 (7) | −0.0050 (8) |
| C5 | 0.0427 (10) | 0.0635 (13) | 0.0594 (13) | 0.0102 (9) | 0.0000 (9) | −0.0145 (11) |
| C6 | 0.0501 (12) | 0.0963 (19) | 0.0437 (11) | 0.0186 (13) | −0.0001 (9) | −0.0120 (12) |
| C7 | 0.0515 (12) | 0.0891 (17) | 0.0410 (11) | 0.0183 (12) | 0.0114 (9) | 0.0091 (11) |
| C8 | 0.0411 (10) | 0.0638 (13) | 0.0441 (10) | 0.0113 (9) | 0.0120 (8) | 0.0081 (9) |
| C9 | 0.0374 (9) | 0.0356 (9) | 0.0653 (12) | 0.0056 (8) | 0.0027 (8) | 0.0003 (9) |
| C10 | 0.0470 (10) | 0.0315 (9) | 0.0522 (11) | 0.0048 (7) | 0.0124 (8) | 0.0033 (8) |
| C11 | 0.0433 (9) | 0.0320 (9) | 0.0412 (9) | 0.0048 (7) | 0.0085 (7) | 0.0017 (7) |
| C12 | 0.0645 (12) | 0.0391 (10) | 0.0395 (10) | −0.0009 (9) | 0.0076 (9) | 0.0026 (8) |
| C13 | 0.0664 (13) | 0.0386 (10) | 0.0458 (10) | −0.0005 (9) | 0.0105 (9) | −0.0047 (8) |
| C14 | 0.0349 (9) | 0.0438 (10) | 0.0498 (10) | 0.0029 (7) | 0.0030 (8) | −0.0071 (8) |
| C15 | 0.0432 (10) | 0.0541 (12) | 0.0536 (11) | −0.0039 (9) | 0.0042 (9) | −0.0153 (9) |
| C16 | 0.0515 (12) | 0.0505 (12) | 0.0804 (16) | −0.0078 (10) | 0.0189 (11) | −0.0138 (11) |
| C17 | 0.0529 (12) | 0.0560 (13) | 0.0719 (14) | 0.0120 (10) | 0.0240 (11) | 0.0099 (11) |
| C18 | 0.0489 (12) | 0.0858 (17) | 0.0489 (12) | 0.0057 (11) | 0.0041 (9) | 0.0033 (11) |
| C19 | 0.0401 (10) | 0.0636 (13) | 0.0514 (11) | −0.0060 (9) | −0.0006 (9) | −0.0093 (10) |
| Se1—C14 | 1.918 (2) | C7—H2 | 0.9300 |
| Se1—C1 | 1.9769 (19) | C8—H1 | 0.9300 |
| Cl1—C17 | 1.742 (2) | C9—C10 | 1.541 (3) |
| O1—C2 | 1.353 (2) | C10—C11 | 1.442 (3) |
| O1—C1 | 1.434 (2) | C11—C12 | 1.504 (3) |
| O2—C9 | 1.208 (2) | C12—C13 | 1.518 (3) |
| O3—C10 | 1.223 (2) | C12—H7 | 0.9700 |
| C1—C13 | 1.505 (3) | C12—H8 | 0.9700 |
| C1—H9 | 0.9800 | C13—H6 | 0.9700 |
| C2—C11 | 1.357 (2) | C13—H5 | 0.9700 |
| C2—C3 | 1.473 (2) | C14—C15 | 1.385 (3) |
| C3—C8 | 1.395 (3) | C14—C19 | 1.388 (3) |
| C3—C4 | 1.401 (3) | C15—C16 | 1.379 (3) |
| C4—C5 | 1.392 (3) | C15—H13 | 0.9300 |
| C4—C9 | 1.478 (3) | C16—C17 | 1.373 (3) |
| C5—C6 | 1.382 (3) | C16—H12 | 0.9300 |
| C5—H4 | 0.9300 | C17—C18 | 1.376 (3) |
| C6—C7 | 1.375 (4) | C18—C19 | 1.377 (3) |
| C6—H3 | 0.9300 | C18—H11 | 0.9300 |
| C7—C8 | 1.389 (3) | C19—H10 | 0.9300 |
| C14—Se1—C1 | 95.62 (8) | C11—C10—C9 | 118.81 (16) |
| C2—O1—C1 | 117.85 (13) | C2—C11—C10 | 119.65 (17) |
| O1—C1—C13 | 111.73 (16) | C2—C11—C12 | 121.77 (17) |
| O1—C1—Se1 | 110.03 (12) | C10—C11—C12 | 118.57 (16) |
| C13—C1—Se1 | 111.65 (13) | C11—C12—C13 | 109.32 (15) |
| O1—C1—H9 | 107.7 | C11—C12—H7 | 109.8 |
| C13—C1—H9 | 107.7 | C13—C12—H7 | 109.8 |
| Se1—C1—H9 | 107.7 | C11—C12—H8 | 109.8 |
| O1—C2—C11 | 123.53 (16) | C13—C12—H8 | 109.8 |
| O1—C2—C3 | 112.17 (14) | H7—C12—H8 | 108.3 |
| C11—C2—C3 | 124.29 (16) | C1—C13—C12 | 110.77 (16) |
| C8—C3—C4 | 119.21 (18) | C1—C13—H6 | 109.5 |
| C8—C3—C2 | 121.29 (17) | C12—C13—H6 | 109.5 |
| C4—C3—C2 | 119.49 (16) | C1—C13—H5 | 109.5 |
| C5—C4—C3 | 120.19 (19) | C12—C13—H5 | 109.5 |
| C5—C4—C9 | 120.03 (19) | H6—C13—H5 | 108.1 |
| C3—C4—C9 | 119.78 (17) | C15—C14—C19 | 119.8 (2) |
| C6—C5—C4 | 119.9 (2) | C15—C14—Se1 | 119.79 (15) |
| C6—C5—H4 | 120.0 | C19—C14—Se1 | 120.39 (15) |
| C4—C5—H4 | 120.0 | C16—C15—C14 | 120.3 (2) |
| C7—C6—C5 | 120.1 (2) | C16—C15—H13 | 119.9 |
| C7—C6—H3 | 120.0 | C14—C15—H13 | 119.9 |
| C5—C6—H3 | 120.0 | C17—C16—C15 | 119.1 (2) |
| C6—C7—C8 | 121.0 (2) | C17—C16—H12 | 120.4 |
| C6—C7—H2 | 119.5 | C15—C16—H12 | 120.4 |
| C8—C7—H2 | 119.5 | C16—C17—C18 | 121.4 (2) |
| C7—C8—C3 | 119.6 (2) | C16—C17—Cl1 | 120.10 (19) |
| C7—C8—H1 | 120.2 | C18—C17—Cl1 | 118.46 (19) |
| C3—C8—H1 | 120.2 | C17—C18—C19 | 119.6 (2) |
| O2—C9—C4 | 122.67 (19) | C17—C18—H11 | 120.2 |
| O2—C9—C10 | 119.38 (19) | C19—C18—H11 | 120.2 |
| C4—C9—C10 | 117.95 (16) | C18—C19—C14 | 119.8 (2) |
| O3—C10—C11 | 122.40 (18) | C18—C19—H10 | 120.1 |
| O3—C10—C9 | 118.79 (17) | C14—C19—H10 | 120.1 |
| C2—O1—C1—C13 | −38.2 (2) | O2—C9—C10—C11 | 178.44 (18) |
| C2—O1—C1—Se1 | 86.38 (16) | C4—C9—C10—C11 | −1.4 (2) |
| C1—O1—C2—C11 | 8.4 (2) | O1—C2—C11—C10 | −179.37 (15) |
| C1—O1—C2—C3 | −171.67 (14) | C3—C2—C11—C10 | 0.7 (3) |
| O1—C2—C3—C8 | −0.4 (2) | O1—C2—C11—C12 | 1.8 (3) |
| C11—C2—C3—C8 | 179.55 (17) | C3—C2—C11—C12 | −178.14 (16) |
| O1—C2—C3—C4 | 179.30 (14) | O3—C10—C11—C2 | −179.78 (18) |
| C11—C2—C3—C4 | −0.8 (2) | C9—C10—C11—C2 | 0.4 (3) |
| C8—C3—C4—C5 | −0.1 (3) | O3—C10—C11—C12 | −0.9 (3) |
| C2—C3—C4—C5 | −179.83 (16) | C9—C10—C11—C12 | 179.28 (16) |
| C8—C3—C4—C9 | 179.35 (16) | C2—C11—C12—C13 | 18.3 (3) |
| C2—C3—C4—C9 | −0.3 (2) | C10—C11—C12—C13 | −160.59 (17) |
| C3—C4—C5—C6 | −1.0 (3) | O1—C1—C13—C12 | 57.9 (2) |
| C9—C4—C5—C6 | 179.49 (18) | Se1—C1—C13—C12 | −65.84 (19) |
| C4—C5—C6—C7 | 1.0 (3) | C11—C12—C13—C1 | −46.3 (2) |
| C5—C6—C7—C8 | 0.2 (3) | C19—C14—C15—C16 | −0.2 (3) |
| C6—C7—C8—C3 | −1.4 (3) | Se1—C14—C15—C16 | 179.92 (16) |
| C4—C3—C8—C7 | 1.3 (3) | C14—C15—C16—C17 | 0.9 (3) |
| C2—C3—C8—C7 | −178.99 (17) | C15—C16—C17—C18 | −0.3 (3) |
| C5—C4—C9—O2 | 1.0 (3) | C15—C16—C17—Cl1 | −177.47 (16) |
| C3—C4—C9—O2 | −178.48 (19) | C16—C17—C18—C19 | −1.0 (3) |
| C5—C4—C9—C10 | −179.15 (16) | Cl1—C17—C18—C19 | 176.26 (17) |
| C3—C4—C9—C10 | 1.4 (2) | C17—C18—C19—C14 | 1.6 (3) |
| O2—C9—C10—O3 | −1.4 (3) | C15—C14—C19—C18 | −1.1 (3) |
| C4—C9—C10—O3 | 178.77 (17) | Se1—C14—C19—C18 | 178.81 (16) |
| H··· | ||||
| C13—H6···O3i | 0.97 | 2.59 | 3.239 (2) | 125 |
| C17—Cl1··· | 1.74 (1) | 3.72 (1) | 4.000 (2) | 86 (1) |