Literature DB >> 28638658

Different intra- and inter-molecular hydrogen-bonding patterns in (3S,4aS,8aS)-2-[(2R,3S)-3-(2,5-X2-benzamido)-2-(2,5-X2-benzo-yloxy)-4-phenyl-butyl]-N-tert-butyldeca-hydro-iso-quinoline-3-carboxamides (X = H or Cl): compounds with moderate aspartyl protease inhibition activity.

Wilson Cunico1, Maria de Lourdes G Ferreira2, James L Wardell2,3, William T A Harrison3.   

Abstract

The crystal structures of (3S,4aS,8aS)-2-[(2R,3S)-3-benzamido-2-benzo-yloxy-4-phenyl-but-yl]-N-tert-butyldeca-hydro-iso-quinoline-3-carboxamide, C38H47N3O4, (I), and (3S,4aS,8aS)-2-[(2R,3S)-3-(2,5-di-chloro-benzamido)-2-(2,5-di-chloro-benzo-yloxy)-4-phenyl-but-yl]-N-tert-butyldeca-hydro-iso-quinoline-3-carboxamide, C38H43Cl4N3O4, (II), are described. Despite their chemical similarity, they adopt different conformations in the solid state: (I) features a bifurcated intra-molecular N-H⋯(N,O) hydrogen bond from the tert-butylamide NH group to the piperidine N atom and the benzoate O atom, whereas (II) has an intra-molecular N-H⋯O link from the benzamide NH group to the tert-butyl-amide O atom. In the crystal of (I), mol-ecules are linked by C(4) amide N-H⋯O hydrogen bonds into chains propagating in the [010] direction, with both donor and acceptor parts of the benzamide group. In the extended structure of (II), C(11) N-H⋯O chains propagating in the [010] direction arise, with the donor being the tert-butylamide NH group and the acceptor being the O atom of the benzamide group.

Entities:  

Keywords:  aspartyl protease inhibition activity; crystal structure; hydrogen bonding; iso­quinoline­carboxamide; malaria

Year:  2017        PMID: 28638658      PMCID: PMC5458323          DOI: 10.1107/S2056989017007800

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Malaria remains one of the most devastating infectious diseases with over 200 million cases and more than 600 000 deaths each year – primarily children under the age of five in sub-Saharan Africa. There is an urgent need for effective drugs with new mechanisms of action, due to the high rate of mutation of the parasite, which leads to the development of resistance of current drugs. One of the critical stages of the life cycle of the parasite during human infection is the degradation of haemoglobin, which provides nutrients for its growth and maturation (Coombs et al., 2001 ▸). Plasmepsins are a family of aspartic proteases involved in the degradation of human haemoglobin by Plasmodium falciparum (Huizing et al., 2015 ▸). As the parasite needs the resulting amino acid building blocks for its growth and development, plasmepsins are an important anti­malarial drug target. Secondary alcohols (Muthas et al., 2005 ▸; Ersmark et al., 2006 ▸) and tertiary alcohols (Motwani et al., 2015 ▸) have been successfully used to develop potent inhibitors of these enzymes. Cunico et al. (2008 ▸) reported the moderate in vitro anti­malarial activities of the products of reactions of the 2-amino­ethyl compound, 3 (see Scheme 1) with various sulfonyl chlorides and acyl chlorides. In the present article, we report the crystal structures of two compounds (see Scheme 2), C38H47N3O4, (I), and C38H43Cl4N3O4, (II), obtained in that study from reactions with acyl chlorides.

Structural commentary

Compound (I) crystallizes in the space group P21 with a single mol­ecule in the asymmetric unit (Fig. 1 ▸). The absolute structure was not definitively established based on refinement of the Flack parameter (Parsons et al., 2013 ▸) and the configurations of the stereogenic centres (C2 R, C3 S, C7 S, C9 S, C14 S) were set to match those in (II): they are those expected based on the known starting materials. Each atom in the C1—C2—C3—C4 ‘backbone’ of (I) bears a different substituent: C1 is attached to a piperidine+cyclo­hexane fused-ring system, which in turn bears a tert-butylamide group. C2 is attached to a benzoate group and C3 bears a benzamide group. Finally, C4 is attached to a simple phenyl ring, i.e. a benzyl group. Some key torsion angles are presented in Table 1 ▸. These show that with respect to the C2—C3 bond, the C1 + C4, C1 + N3 and N3 + O4 pairings are gauche, whereas the C4 + O4 atoms are mutually anti. In terms of the H atoms, H2 is anti to N3 (171°) and H3 is anti to C1 (176°); the gauche torsion angle between the H atoms is 54°. The N1—C1—C2—C3 torsion angle of 170.4 (3)° indicates an anti conformation and the N1/C7/C8/C9/C14/C5 and C9–C14 rings have a cis-fused junction (H9—C9—C14—H14 = −52°). The amide torsion angles C3—N3—C5—C27 and C17N2—C16—C7 are −178.3 (3) and −164.7 (4)°, respectively, which reflect the expected near-planar conformations for these groups. The dihedral angles between the aromatic rings C21C26 (A), C27–C32 (B) and C33C38 (C) are A/B = 85.7 (2), A/C = 79.2 (2) and B/C = 17.3 (2)°. The conformation of (I) is supported by a bifurcated intra­molecular N—H⋯(N,O) hydrogen bond (Table 2 ▸) arising from the tert-butylamide group: the acceptor atoms are the N atom of the piperidine ring and the O atom of the C=O group of the benzoate group. The bifurcated bond is very asymmetric in terms of angles and the H⋯O link is long, but given that the assemblage is close to planar (bond-angle sum for the H atom = 353°), we regard it as being just significant.
Figure 1

The asymmetric unit of (I), showing 50% probability displacement ellipsoids, with most H atoms omitted for clarity. The bifurcated intra­molecular hydrogen bond is shown as a double-dashed line.

Table 1

Selected torsion angles (°) for (I)

N1—C1—C2—C3170.4 (3)C1—C2—C3—C459.4 (4)
C1—C2—C3—N3−66.3 (4)C4—C3—N3—C5138.6 (4)
O4—C2—C3—C4178.4 (3)C3—C2—O4—C6131.5 (3)
Table 2

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N⋯O50.90 (5)2.55 (5)3.384 (5)154 (4)
N2—H1N⋯N10.90 (5)2.32 (5)2.773 (4)111 (4)
N3—H3N⋯O3i 0.93 (5)2.04 (5)2.929 (4)161 (4)
C18—H18B⋯O2ii 0.982.393.310 (5)157
C20—H20A⋯O20.982.352.963 (6)120
C29—H29⋯O5i 0.952.583.467 (5)157

Symmetry codes: (i) ; (ii) .

Compound (II) crystallizes in the space group P212121 with one mol­ecule in the asymmetric unit (Fig. 2 ▸). Here, the absolute structure is very well established (C2 R, C3 S, C7 S, C9 S, C14 S) and is consistent with the starting materials (Cunico et al., 2008 ▸). The C1—C2—C3—C4 backbone bears the equivalent substituents to (I), with the difference that the benzyl and amide rings both bear a pair of Cl atoms at the meta positions. Selected torsion angles for (II) (Table 3 ▸) show similarities but also one major difference with respect to (I). In terms of the central C2—C3 bond in (II), the C1 + C4, C1 + N3 and N3 + O4 pairings are gauche, whereas the C4 + O4 atoms are mutually anti. With respect to the H atoms, H2 is anti to N3 (−175°) and H3 is anti to C1 (−166°); the torsion angle between the H atoms is 69°. Thus, the overall conformation of the atoms about the C2—C3 bond in (II) is essentially the same as in (I), although some of the torsion angles differ by as much as 20°. The N1—C1—C2—C3 gauche torsion angle of −69.1 (3)° in (II) is quite different to the value for (I) above, whereas the amide torsion angles C3—N3—C5—C27 [180.0 (3)°] and C17N2—C16—C7 [–177.5 (3)°] in (II) are similar. The dihedral angles between the aromatic rings C21C26 (A), C27–C32 (B) and C33C38 (C) are A/B = 74.84 (17), A/C = 67.99 (17) and B/C = 68.91 (15)°: it may be seen that the first two of these values are similar to the equivalent data for (I), but the third value is very different, possibly reflecting a reorientation in (II) to minimize unfavourable steric inter­actions between the bichlorinated rings. Compound (II) features a completely different intra­molecular N—H⋯O hydrogen bond (Table 4 ▸) to (I): in (II), a much shorter (and presumably stronger) bond arises from the benzamide NH group to the tert-butylamide O atom, which no doubt correlates with the very different N1—C1—C2—C3 torsion angles for (I) and (II) already mentioned.
Figure 2

The asymmetric unit of (II), showing 50% probability displacement ellipsoids, with most H atoms omitted for clarity. The intra­molecular hydrogen bond is shown as a double-dashed line.

Table 3

Selected torsion angles (°) for (II)

N1—C1—C2—C3−69.1 (3)C1—C2—C3—C474.4 (3)
C1—C2—C3—N3−49.5 (3)C4—C3—N3—C5136.6 (3)
O4—C2—C3—C4−167.3 (2)C3—C2—O4—C6158.0 (2)
Table 4

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N⋯O3i 0.84 (4)2.13 (4)2.931 (3)160 (3)
N3—H2N⋯O20.88 (4)1.99 (4)2.834 (3)159 (3)
C4—H4A⋯N10.992.553.149 (4)119
C18—H18A⋯O20.982.362.975 (4)120
C34—H34⋯O30.952.403.324 (4)163

Symmetry code: (i) .

Supra­molecular features

In the crystal of (I), mol­ecules are linked by classical C(4) amide N—H⋯O hydrogen bonds into chains propagating in the [010] direction, with adjacent mol­ecules related by the 21 screw axis. Both donor and acceptor are part of the benzamide group (Fig. 3 ▸). Two weak C—H⋯O inter­actions are also observed.
Figure 3

A fragment of a [010] hydrogen-bonded chain in (I), showing 20% probability displacement ellipsoids; the pendant rings and C-bound H atoms have been omitted for clarity. [Symmetry code as in Table 2 ▸; additionally (iii) −x, y − , −z.]

In the extended structure of (II), C(11) [010] N—H⋯O chains arise, with the donor being the tert-butylamide NH group and the acceptor being the O atom of the benzamide ring (Fig. 4 ▸). Adjacent mol­ecules are again related by a 21 screw axis.
Figure 4

A fragment of a [010] hydrogen-bonded chain in (II), showing 20% probability displacement ellipsoids; the pendant rings and C-bound H atoms have been omitted for clarity. [Symmetry code as in Table 4 ▸; additionally (ii) −x + 1, y − , −z + .]

In short, for (I), the tert-butylamide NH moiety forms an intra­molecular hydrogen bond and the benzamide NH group forms an inter­molecular link, whereas for (II), the situation is reversed: the benzamide NH group forms the intra­molecular bond and the tert-butyl NH group forms the inter­molecular link.

Database survey

A survey of of the Cambridge Structural Database (Groom et al., 2016 ▸: updated to April 2017) for the grouping of atoms about the C1—C2—C3—C4 fragment in (I) and (II) yielded 24 matches. The most similar are the isostructural halide salts YURSUB and YURTAI of the anti-HIV drug saquinavir mesylate (Fandaruff et al., 2015 ▸), which also act as protease inhibitors. The other hits have little similarity to the title compounds.

Synthesis and crystallisation

As summarized in Scheme 1, compounds (I) and (II) were prepared as described previously (Cunico et al., 2008 ▸) and recrystallized from methanol solution. (I): colourless needles, m.p. 475–476 K, ESI–HRMS (M + H): calculated for C38H48N3O4: 610.3645, found: 610.3638. (II): colourless slabs, m.p. 459–460 K, ESI–HRMS (M + H): calculated for C38H44 35Cl4N3O4: 746.2086, found: 746.2078.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 5 ▸. The N-bound H atoms were located in difference maps and their positions were freely refined. The C-bound H atoms were placed geometrically (C—H = 0.95–1.00 Å) and refined as riding atoms. The constraint U iso(H) = 1.2U eq(C) or 1.5U eq(methyl C) was applied in all cases. The methyl groups were allowed to rotate, but not to tip, to best fit the electron density.
Table 5

Experimental details

 (I)(II)
Crystal data
Chemical formulaC38H47N3O4 C38H43Cl4N3O4
M r 609.78747.55
Crystal system, space groupMonoclinic, P21 Orthorhombic, P212121
Temperature (K)100100
a, b, c (Å)11.4866 (3), 9.4448 (2), 16.8257 (5)10.4539 (1), 15.1917 (1), 24.3677 (2)
α, β, γ (°)90, 109.227 (3), 9090, 90, 90
V3)1723.58 (8)3869.90 (6)
Z 24
Radiation typeCu KαCu Kα
μ (mm−1)0.603.12
Crystal size (mm)0.52 × 0.15 × 0.050.25 × 0.20 × 0.04
 
Data collection
DiffractometerRigaku Mercury CCDRigaku Mercury CCD
Absorption correctionMulti-scan (SADABS; Sheldrick, 2004)Multi-scan (SADABS; Sheldrick, 2004)
T min, T max 0.654, 0.9710.611, 0.886
No. of measured, independent and observed [I > 2σ(I)] reflections24074, 5349, 454744109, 7278, 7140
R int 0.0680.046
(sin θ/λ)max−1)0.6100.610
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.056, 0.151, 1.070.038, 0.100, 1.05
No. of reflections53497278
No. of parameters415451
No. of restraints10
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.35, −0.260.28, −0.32
Absolute structureFlack x determined using 1316 quotients [(I +) − (I )]/[(I +) + (I )] (Parsons et al., 2013)Flack x determined using 3021 quotients [(I +) − (I )]/[(I +) + (I )] (Parsons et al., 2013)
Absolute structure parameter−0.4 (2)−0.006 (7)

Computer programs: CrysAlis PRO (Rigaku, 2014 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, II, global. DOI: 10.1107/S2056989017007800/pk2602sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017007800/pk2602Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989017007800/pk2602IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017007800/pk2602Isup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017007800/pk2602IIsup5.cml CCDC references: 1552422, 1552421 Additional supporting information: crystallographic information; 3D view; checkCIF report
C38H47N3O4F(000) = 656
Mr = 609.78Dx = 1.175 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
a = 11.4866 (3) ÅCell parameters from 8813 reflections
b = 9.4448 (2) Åθ = 5.4–69.6°
c = 16.8257 (5) ŵ = 0.60 mm1
β = 109.227 (3)°T = 100 K
V = 1723.58 (8) Å3Needle, colourless
Z = 20.52 × 0.15 × 0.05 mm
Rigaku Mercury CCD diffractometer4547 reflections with I > 2σ(I)
ω scansRint = 0.068
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)θmax = 70.1°, θmin = 2.8°
Tmin = 0.654, Tmax = 0.971h = −14→13
24074 measured reflectionsk = −11→9
5349 independent reflectionsl = −20→19
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.056w = 1/[σ2(Fo2) + (0.0894P)2 + 0.2672P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.151(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.35 e Å3
5349 reflectionsΔρmin = −0.26 e Å3
415 parametersAbsolute structure: Flack x determined using 1316 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: −0.4 (2)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.1094 (4)0.3195 (4)0.1956 (2)0.0347 (8)
H1A0.19500.35300.20690.042*
H1B0.05660.36720.14380.042*
C20.1046 (3)0.1585 (4)0.1806 (2)0.0322 (8)
H20.16680.11130.22950.039*
C30.1262 (3)0.1138 (4)0.0997 (2)0.0310 (8)
H30.12650.00790.09880.037*
C40.2513 (3)0.1625 (4)0.0978 (2)0.0353 (8)
H4A0.24910.26650.09000.042*
H4B0.31400.14140.15300.042*
C5−0.0678 (3)0.0764 (4)−0.0162 (2)0.0322 (8)
C6−0.0309 (4)0.0410 (4)0.2415 (2)0.0344 (9)
C70.1555 (3)0.4553 (4)0.3252 (2)0.0362 (8)
H70.16680.54060.29330.043*
C80.1086 (4)0.5037 (5)0.3955 (3)0.0408 (9)
H8A0.16740.57330.43110.049*
H8B0.10600.42130.43120.049*
C9−0.0194 (4)0.5709 (5)0.3631 (3)0.0408 (9)
H9−0.01350.65870.33140.049*
C10−0.0665 (4)0.6127 (5)0.4343 (3)0.0469 (10)
H10A−0.14080.67260.41140.056*
H10B−0.00270.66980.47590.056*
C11−0.0984 (4)0.4852 (5)0.4784 (3)0.0510 (12)
H11A−0.02240.43070.50690.061*
H11B−0.13300.51790.52180.061*
C12−0.1913 (4)0.3899 (5)0.4161 (3)0.0497 (11)
H12A−0.27020.44150.39170.060*
H12B−0.20720.30540.44570.060*
C13−0.1435 (4)0.3435 (5)0.3454 (3)0.0430 (10)
H13A−0.07040.28210.36910.052*
H13B−0.20790.28710.30380.052*
C14−0.1088 (4)0.4686 (5)0.3014 (2)0.0381 (9)
H14−0.18630.52250.27320.046*
C15−0.0557 (3)0.4256 (4)0.2330 (3)0.0379 (9)
H15A−0.11280.35800.19440.046*
H15B−0.05010.51050.19990.046*
C160.2805 (4)0.3896 (5)0.3683 (3)0.0389 (9)
C170.3889 (4)0.1660 (5)0.4317 (3)0.0395 (9)
C180.4024 (4)0.1975 (5)0.5232 (3)0.0430 (10)
H18A0.41440.29950.53360.064*
H18B0.47370.14620.56040.064*
H18C0.32770.16730.53450.064*
C190.3574 (4)0.0085 (5)0.4131 (3)0.0484 (11)
H19A0.2764−0.01130.41820.073*
H19B0.4200−0.04990.45330.073*
H19C0.3556−0.01350.35570.073*
C200.5072 (4)0.1970 (6)0.4129 (3)0.0516 (12)
H20A0.52840.29730.42350.077*
H20B0.49520.17510.35380.077*
H20C0.57420.13860.44920.077*
C210.2909 (3)0.0951 (4)0.0296 (2)0.0345 (8)
C220.3112 (4)−0.0514 (5)0.0303 (3)0.0381 (9)
H220.2960−0.10890.07210.046*
C230.3533 (4)−0.1124 (5)−0.0299 (3)0.0449 (10)
H230.3680−0.2115−0.02820.054*
C240.3743 (4)−0.0325 (6)−0.0919 (3)0.0508 (11)
H240.4034−0.0756−0.13280.061*
C250.3523 (4)0.1131 (6)−0.0941 (3)0.0523 (11)
H250.36570.1698−0.13690.063*
C260.3109 (4)0.1745 (5)−0.0337 (3)0.0444 (10)
H260.29590.2736−0.03580.053*
C27−0.1602 (3)0.1360 (4)−0.0933 (2)0.0315 (8)
C28−0.1291 (4)0.2311 (4)−0.1467 (2)0.0335 (8)
H28−0.04700.2653−0.13230.040*
C29−0.2175 (4)0.2756 (4)−0.2206 (3)0.0370 (9)
H29−0.19550.3395−0.25680.044*
C30−0.3380 (4)0.2273 (4)−0.2417 (3)0.0386 (9)
H30−0.39840.2582−0.29230.046*
C31−0.3700 (4)0.1339 (4)−0.1889 (3)0.0382 (9)
H31−0.45250.1011−0.20330.046*
C32−0.2825 (3)0.0883 (4)−0.1156 (3)0.0353 (8)
H32−0.30520.0240−0.07980.042*
C33−0.1626 (3)0.0098 (4)0.2289 (2)0.0346 (8)
C34−0.2557 (4)0.0418 (5)0.1540 (3)0.0400 (9)
H34−0.23540.08060.10810.048*
C35−0.3772 (4)0.0176 (5)0.1463 (3)0.0481 (11)
H35−0.44060.04050.09520.058*
C36−0.4071 (4)−0.0400 (5)0.2126 (3)0.0493 (11)
H36−0.4910−0.05660.20680.059*
C37−0.3155 (4)−0.0735 (5)0.2872 (3)0.0506 (11)
H37−0.3363−0.11270.33280.061*
C38−0.1931 (4)−0.0496 (5)0.2950 (3)0.0449 (10)
H38−0.1298−0.07380.34580.054*
N10.0677 (3)0.3598 (3)0.26662 (19)0.0332 (7)
N20.2845 (3)0.2467 (4)0.3755 (2)0.0369 (8)
H1N0.208 (4)0.209 (6)0.358 (3)0.044*
N30.0279 (3)0.1602 (3)0.02500 (19)0.0301 (7)
H3N0.027 (4)0.252 (6)0.005 (3)0.036*
O20.3711 (3)0.4674 (3)0.3992 (2)0.0506 (8)
O3−0.0799 (2)−0.0457 (3)0.00716 (17)0.0344 (6)
O4−0.0177 (2)0.1111 (3)0.17533 (16)0.0329 (6)
O50.0540 (2)0.0080 (4)0.30361 (18)0.0449 (7)
U11U22U33U12U13U23
C10.036 (2)0.0253 (19)0.040 (2)−0.0010 (16)0.0092 (16)0.0009 (15)
C20.0261 (17)0.0251 (19)0.043 (2)0.0008 (15)0.0086 (15)0.0016 (16)
C30.0292 (17)0.0212 (18)0.0410 (19)0.0052 (15)0.0094 (14)0.0021 (15)
C40.0318 (18)0.027 (2)0.045 (2)−0.0015 (16)0.0095 (15)0.0010 (17)
C50.0328 (19)0.023 (2)0.039 (2)−0.0003 (15)0.0090 (15)−0.0032 (15)
C60.037 (2)0.030 (2)0.038 (2)0.0008 (16)0.0138 (17)0.0014 (16)
C70.037 (2)0.0251 (19)0.042 (2)−0.0047 (16)0.0062 (16)0.0014 (17)
C80.042 (2)0.031 (2)0.045 (2)−0.0043 (18)0.0092 (17)−0.0029 (17)
C90.045 (2)0.027 (2)0.047 (2)0.0004 (18)0.0100 (18)0.0000 (17)
C100.050 (2)0.032 (2)0.057 (3)0.006 (2)0.015 (2)−0.005 (2)
C110.057 (3)0.049 (3)0.048 (2)0.008 (2)0.020 (2)−0.002 (2)
C120.052 (3)0.043 (3)0.059 (3)0.002 (2)0.024 (2)0.005 (2)
C130.043 (2)0.033 (2)0.053 (2)−0.0001 (18)0.0147 (18)−0.0012 (19)
C140.035 (2)0.033 (2)0.044 (2)0.0068 (17)0.0097 (16)0.0013 (17)
C150.033 (2)0.032 (2)0.045 (2)0.0014 (16)0.0073 (16)0.0013 (16)
C160.039 (2)0.030 (2)0.043 (2)−0.0064 (17)0.0076 (17)−0.0028 (16)
C170.0319 (19)0.033 (2)0.046 (2)0.0001 (17)0.0033 (16)−0.0008 (18)
C180.041 (2)0.035 (2)0.047 (2)0.0005 (18)0.0055 (17)0.0029 (18)
C190.044 (2)0.030 (2)0.059 (3)0.0076 (19)0.001 (2)−0.004 (2)
C200.041 (2)0.051 (3)0.060 (3)0.003 (2)0.013 (2)−0.004 (2)
C210.0264 (17)0.032 (2)0.043 (2)−0.0004 (16)0.0082 (14)0.0002 (17)
C220.036 (2)0.031 (2)0.047 (2)−0.0002 (17)0.0132 (16)−0.0019 (18)
C230.036 (2)0.036 (2)0.060 (3)−0.0019 (18)0.0131 (19)−0.007 (2)
C240.048 (2)0.050 (3)0.057 (3)−0.008 (2)0.020 (2)−0.011 (2)
C250.059 (3)0.055 (3)0.050 (2)−0.006 (2)0.026 (2)0.001 (2)
C260.047 (2)0.035 (2)0.052 (2)−0.0017 (19)0.0174 (18)0.003 (2)
C270.0311 (18)0.0192 (18)0.042 (2)0.0015 (15)0.0095 (15)−0.0018 (15)
C280.0353 (19)0.0226 (18)0.041 (2)0.0007 (16)0.0099 (16)−0.0031 (16)
C290.043 (2)0.023 (2)0.042 (2)0.0030 (16)0.0095 (17)0.0019 (16)
C300.038 (2)0.028 (2)0.043 (2)0.0039 (17)0.0031 (17)−0.0025 (17)
C310.0310 (18)0.031 (2)0.048 (2)0.0012 (16)0.0063 (16)−0.0010 (17)
C320.0333 (19)0.0219 (19)0.048 (2)−0.0015 (16)0.0099 (16)−0.0005 (16)
C330.0347 (19)0.0245 (18)0.046 (2)−0.0012 (16)0.0156 (16)0.0015 (16)
C340.038 (2)0.034 (2)0.047 (2)−0.0014 (17)0.0115 (17)0.0035 (18)
C350.036 (2)0.045 (3)0.059 (3)−0.004 (2)0.0104 (19)0.003 (2)
C360.040 (2)0.043 (3)0.065 (3)−0.008 (2)0.018 (2)0.004 (2)
C370.047 (2)0.047 (3)0.062 (3)−0.002 (2)0.024 (2)0.010 (2)
C380.042 (2)0.042 (3)0.051 (2)−0.001 (2)0.0156 (18)0.008 (2)
N10.0307 (16)0.0262 (17)0.0396 (17)−0.0022 (13)0.0075 (13)−0.0028 (13)
N20.0325 (16)0.0274 (18)0.0445 (18)0.0014 (14)0.0040 (14)0.0008 (14)
N30.0289 (15)0.0188 (16)0.0398 (16)0.0015 (12)0.0075 (12)0.0012 (13)
O20.0407 (16)0.0357 (17)0.0652 (19)−0.0084 (14)0.0038 (14)−0.0029 (15)
O30.0356 (13)0.0185 (13)0.0470 (15)0.0024 (11)0.0111 (11)0.0009 (11)
O40.0303 (12)0.0283 (14)0.0391 (13)−0.0033 (11)0.0100 (10)0.0022 (11)
O50.0361 (15)0.0494 (18)0.0457 (16)0.0009 (14)0.0087 (12)0.0121 (14)
C1—N11.476 (5)C17—N21.472 (5)
C1—C21.539 (5)C17—C201.522 (6)
C1—H1A0.9900C17—C181.526 (6)
C1—H1B0.9900C17—C191.538 (6)
C2—O41.449 (4)C18—H18A0.9800
C2—C31.521 (5)C18—H18B0.9800
C2—H21.0000C18—H18C0.9800
C3—N31.453 (4)C19—H19A0.9800
C3—C41.519 (5)C19—H19B0.9800
C3—H31.0000C19—H19C0.9800
C4—C211.507 (6)C20—H20A0.9800
C4—H4A0.9900C20—H20B0.9800
C4—H4B0.9900C20—H20C0.9800
C5—O31.241 (5)C21—C261.383 (6)
C5—N31.346 (5)C21—C221.403 (6)
C5—C271.490 (5)C22—C231.383 (6)
C6—O51.213 (5)C22—H220.9500
C6—O41.346 (5)C23—C241.372 (7)
C6—C331.486 (5)C23—H230.9500
C7—N11.465 (5)C24—C251.397 (8)
C7—C161.512 (6)C24—H240.9500
C7—C81.522 (6)C25—C261.383 (7)
C7—H71.0000C25—H250.9500
C8—C91.527 (6)C26—H260.9500
C8—H8A0.9900C27—C281.397 (5)
C8—H8B0.9900C27—C321.403 (5)
C9—C101.520 (6)C28—C291.386 (5)
C9—C141.537 (6)C28—H280.9500
C9—H91.0000C29—C301.388 (6)
C10—C111.522 (7)C29—H290.9500
C10—H10A0.9900C30—C311.384 (6)
C10—H10B0.9900C30—H300.9500
C11—C121.520 (7)C31—C321.380 (6)
C11—H11A0.9900C31—H310.9500
C11—H11B0.9900C32—H320.9500
C12—C131.529 (6)C33—C381.390 (6)
C12—H12A0.9900C33—C341.391 (5)
C12—H12B0.9900C34—C351.378 (6)
C13—C141.516 (6)C34—H340.9500
C13—H13A0.9900C35—C361.382 (6)
C13—H13B0.9900C35—H350.9500
C14—C151.524 (6)C36—C371.384 (7)
C14—H141.0000C36—H360.9500
C15—N11.479 (5)C37—C381.387 (6)
C15—H15A0.9900C37—H370.9500
C15—H15B0.9900C38—H380.9500
C16—O21.240 (5)N2—H1N0.90 (5)
C16—N21.354 (5)N3—H3N0.93 (5)
N1—C1—C2112.5 (3)N2—C17—C18109.8 (3)
N1—C1—H1A109.1C20—C17—C18111.8 (3)
C2—C1—H1A109.1N2—C17—C19106.4 (3)
N1—C1—H1B109.1C20—C17—C19108.1 (4)
C2—C1—H1B109.1C18—C17—C19109.5 (4)
H1A—C1—H1B107.8C17—C18—H18A109.5
O4—C2—C3107.4 (3)C17—C18—H18B109.5
O4—C2—C1107.3 (3)H18A—C18—H18B109.5
C3—C2—C1114.4 (3)C17—C18—H18C109.5
O4—C2—H2109.2H18A—C18—H18C109.5
C3—C2—H2109.2H18B—C18—H18C109.5
C1—C2—H2109.2C17—C19—H19A109.5
N3—C3—C4111.1 (3)C17—C19—H19B109.5
N3—C3—C2112.4 (3)H19A—C19—H19B109.5
C4—C3—C2111.7 (3)C17—C19—H19C109.5
N3—C3—H3107.1H19A—C19—H19C109.5
C4—C3—H3107.1H19B—C19—H19C109.5
C2—C3—H3107.1C17—C20—H20A109.5
C21—C4—C3114.4 (3)C17—C20—H20B109.5
C21—C4—H4A108.7H20A—C20—H20B109.5
C3—C4—H4A108.7C17—C20—H20C109.5
C21—C4—H4B108.7H20A—C20—H20C109.5
C3—C4—H4B108.7H20B—C20—H20C109.5
H4A—C4—H4B107.6C26—C21—C22118.1 (4)
O3—C5—N3122.8 (3)C26—C21—C4121.7 (4)
O3—C5—C27120.3 (3)C22—C21—C4120.1 (4)
N3—C5—C27116.9 (3)C23—C22—C21120.2 (4)
O5—C6—O4124.2 (4)C23—C22—H22119.9
O5—C6—C33124.3 (4)C21—C22—H22119.9
O4—C6—C33111.5 (3)C24—C23—C22121.3 (4)
N1—C7—C16113.8 (3)C24—C23—H23119.4
N1—C7—C8111.5 (3)C22—C23—H23119.4
C16—C7—C8105.9 (3)C23—C24—C25119.0 (4)
N1—C7—H7108.5C23—C24—H24120.5
C16—C7—H7108.5C25—C24—H24120.5
C8—C7—H7108.5C26—C25—C24119.8 (5)
C7—C8—C9113.1 (3)C26—C25—H25120.1
C7—C8—H8A109.0C24—C25—H25120.1
C9—C8—H8A109.0C25—C26—C21121.5 (4)
C7—C8—H8B109.0C25—C26—H26119.2
C9—C8—H8B109.0C21—C26—H26119.2
H8A—C8—H8B107.8C28—C27—C32118.7 (3)
C10—C9—C8112.2 (3)C28—C27—C5122.9 (3)
C10—C9—C14111.3 (4)C32—C27—C5118.3 (3)
C8—C9—C14109.3 (3)C29—C28—C27120.3 (4)
C10—C9—H9108.0C29—C28—H28119.9
C8—C9—H9108.0C27—C28—H28119.9
C14—C9—H9108.0C28—C29—C30120.3 (4)
C9—C10—C11112.6 (4)C28—C29—H29119.9
C9—C10—H10A109.1C30—C29—H29119.9
C11—C10—H10A109.1C31—C30—C29119.8 (4)
C9—C10—H10B109.1C31—C30—H30120.1
C11—C10—H10B109.1C29—C30—H30120.1
H10A—C10—H10B107.8C32—C31—C30120.3 (4)
C12—C11—C10111.0 (4)C32—C31—H31119.9
C12—C11—H11A109.4C30—C31—H31119.9
C10—C11—H11A109.4C31—C32—C27120.6 (4)
C12—C11—H11B109.4C31—C32—H32119.7
C10—C11—H11B109.4C27—C32—H32119.7
H11A—C11—H11B108.0C38—C33—C34119.5 (4)
C11—C12—C13110.8 (4)C38—C33—C6118.6 (3)
C11—C12—H12A109.5C34—C33—C6121.9 (4)
C13—C12—H12A109.5C35—C34—C33120.1 (4)
C11—C12—H12B109.5C35—C34—H34119.9
C13—C12—H12B109.5C33—C34—H34119.9
H12A—C12—H12B108.1C34—C35—C36120.2 (4)
C14—C13—C12112.1 (4)C34—C35—H35119.9
C14—C13—H13A109.2C36—C35—H35119.9
C12—C13—H13A109.2C35—C36—C37120.4 (4)
C14—C13—H13B109.2C35—C36—H36119.8
C12—C13—H13B109.2C37—C36—H36119.8
H13A—C13—H13B107.9C36—C37—C38119.5 (4)
C13—C14—C15113.3 (4)C36—C37—H37120.2
C13—C14—C9112.6 (3)C38—C37—H37120.2
C15—C14—C9109.4 (3)C37—C38—C33120.3 (4)
C13—C14—H14107.0C37—C38—H38119.8
C15—C14—H14107.0C33—C38—H38119.8
C9—C14—H14107.0C7—N1—C1111.6 (3)
N1—C15—C14113.2 (3)C7—N1—C15111.0 (3)
N1—C15—H15A108.9C1—N1—C15108.9 (3)
C14—C15—H15A108.9C16—N2—C17124.8 (3)
N1—C15—H15B108.9C16—N2—H1N111 (3)
C14—C15—H15B108.9C17—N2—H1N120 (3)
H15A—C15—H15B107.7C5—N3—C3122.5 (3)
O2—C16—N2123.6 (4)C5—N3—H3N117 (3)
O2—C16—C7119.5 (4)C3—N3—H3N121 (3)
N2—C16—C7116.8 (3)C6—O4—C2118.2 (3)
N2—C17—C20111.1 (4)
N1—C1—C2—O451.4 (4)N3—C5—C27—C32−151.0 (4)
N1—C1—C2—C3170.4 (3)C32—C27—C28—C29−0.7 (6)
O4—C2—C3—N352.7 (4)C5—C27—C28—C29175.6 (4)
C1—C2—C3—N3−66.3 (4)C27—C28—C29—C300.7 (6)
O4—C2—C3—C4178.4 (3)C28—C29—C30—C31−0.2 (6)
C1—C2—C3—C459.4 (4)C29—C30—C31—C32−0.2 (6)
N3—C3—C4—C21−66.6 (4)C30—C31—C32—C270.1 (6)
C2—C3—C4—C21167.0 (3)C28—C27—C32—C310.3 (6)
N1—C7—C8—C9−54.5 (5)C5—C27—C32—C31−176.2 (3)
C16—C7—C8—C9−178.9 (3)O5—C6—C33—C386.1 (6)
C7—C8—C9—C10177.6 (4)O4—C6—C33—C38−173.6 (4)
C7—C8—C9—C1453.6 (5)O5—C6—C33—C34−175.7 (4)
C8—C9—C10—C11−70.2 (5)O4—C6—C33—C344.6 (6)
C14—C9—C10—C1152.6 (5)C38—C33—C34—C351.3 (7)
C9—C10—C11—C12−55.8 (5)C6—C33—C34—C35−176.8 (4)
C10—C11—C12—C1356.2 (5)C33—C34—C35—C36−0.6 (7)
C11—C12—C13—C14−55.1 (5)C34—C35—C36—C370.1 (8)
C12—C13—C14—C15177.6 (3)C35—C36—C37—C38−0.3 (8)
C12—C13—C14—C952.7 (5)C36—C37—C38—C331.0 (7)
C10—C9—C14—C13−51.0 (5)C34—C33—C38—C37−1.5 (7)
C8—C9—C14—C1373.5 (4)C6—C33—C38—C37176.7 (4)
C10—C9—C14—C15−178.0 (3)C16—C7—N1—C1−63.7 (4)
C8—C9—C14—C15−53.6 (4)C8—C7—N1—C1176.5 (3)
C13—C14—C15—N1−69.4 (4)C16—C7—N1—C15174.5 (3)
C9—C14—C15—N157.3 (4)C8—C7—N1—C1554.8 (4)
N1—C7—C16—O2159.3 (4)C2—C1—N1—C7130.4 (3)
C8—C7—C16—O2−77.9 (5)C2—C1—N1—C15−106.6 (3)
N1—C7—C16—N2−25.0 (5)C14—C15—N1—C7−57.9 (4)
C8—C7—C16—N297.9 (4)C14—C15—N1—C1178.8 (3)
C3—C4—C21—C26117.9 (4)O2—C16—N2—C1710.8 (7)
C3—C4—C21—C22−63.6 (5)C7—C16—N2—C17−164.7 (4)
C26—C21—C22—C231.7 (6)C20—C17—N2—C16−57.7 (6)
C4—C21—C22—C23−176.8 (3)C18—C17—N2—C1666.5 (5)
C21—C22—C23—C24−1.0 (6)C19—C17—N2—C16−175.1 (4)
C22—C23—C24—C25−0.1 (7)O3—C5—N3—C31.0 (6)
C23—C24—C25—C260.5 (7)C27—C5—N3—C3−178.3 (3)
C24—C25—C26—C210.2 (7)C4—C3—N3—C5138.6 (4)
C22—C21—C26—C25−1.3 (6)C2—C3—N3—C5−95.4 (4)
C4—C21—C26—C25177.2 (4)O5—C6—O4—C2−4.2 (6)
O3—C5—C27—C28−146.7 (4)C33—C6—O4—C2175.5 (3)
N3—C5—C27—C2832.6 (5)C3—C2—O4—C6131.5 (3)
O3—C5—C27—C3229.7 (5)C1—C2—O4—C6−105.0 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1N···O50.90 (5)2.55 (5)3.384 (5)154 (4)
N2—H1N···N10.90 (5)2.32 (5)2.773 (4)111 (4)
N3—H3N···O3i0.93 (5)2.04 (5)2.929 (4)161 (4)
C18—H18B···O2ii0.982.393.310 (5)157
C20—H20A···O20.982.352.963 (6)120
C29—H29···O5i0.952.583.467 (5)157
C38H43Cl4N3O4Dx = 1.283 Mg m3
Mr = 747.55Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, P212121Cell parameters from 40379 reflections
a = 10.4539 (1) Åθ = 3.4–70.0°
b = 15.1917 (1) ŵ = 3.12 mm1
c = 24.3677 (2) ÅT = 100 K
V = 3869.90 (6) Å3Slab, colourless
Z = 40.25 × 0.20 × 0.04 mm
F(000) = 1568
Rigaku Mercury CCD diffractometer7140 reflections with I > 2σ(I)
ω scansRint = 0.046
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)θmax = 70.1°, θmin = 3.4°
Tmin = 0.611, Tmax = 0.886h = −12→12
44109 measured reflectionsk = −15→18
7278 independent reflectionsl = −29→29
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038w = 1/[σ2(Fo2) + (0.0552P)2 + 1.8039P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.100(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.28 e Å3
7278 reflectionsΔρmin = −0.32 e Å3
451 parametersAbsolute structure: Flack x determined using 3021 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: −0.006 (7)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.3339 (3)0.3116 (2)0.28983 (12)0.0291 (6)
H1A0.42280.30550.27640.035*
H1B0.29480.36290.27120.035*
C20.2587 (3)0.2289 (2)0.27568 (12)0.0300 (6)
H20.17020.23350.29100.036*
C30.3188 (3)0.1407 (2)0.29311 (12)0.0291 (6)
H30.27170.09290.27340.035*
C40.3109 (3)0.1206 (2)0.35483 (13)0.0330 (7)
H4A0.35950.16570.37550.040*
H4B0.22050.12350.36690.040*
C50.4901 (3)0.09795 (19)0.22901 (12)0.0283 (6)
C60.1687 (3)0.2720 (2)0.18833 (14)0.0339 (7)
C70.4476 (3)0.37726 (19)0.36694 (12)0.0269 (6)
H70.44500.43680.34950.032*
C80.4452 (3)0.3883 (2)0.42941 (12)0.0304 (6)
H8A0.45000.32970.44710.036*
H8B0.52090.42280.44110.036*
C90.3234 (3)0.4354 (2)0.44809 (13)0.0327 (7)
H90.32380.49520.43090.039*
C100.3151 (4)0.4484 (2)0.51013 (14)0.0399 (7)
H10A0.39680.47350.52350.048*
H10B0.24640.49130.51830.048*
C110.2880 (4)0.3630 (3)0.54077 (14)0.0455 (8)
H11A0.27580.37600.58020.055*
H11B0.36250.32320.53720.055*
C120.1691 (4)0.3171 (3)0.51853 (16)0.0503 (9)
H12A0.09300.35420.52570.060*
H12B0.15710.26030.53780.060*
C130.1815 (3)0.3005 (2)0.45668 (14)0.0407 (8)
H13A0.25340.25960.44980.049*
H13B0.10210.27270.44280.049*
C140.2048 (3)0.3865 (2)0.42625 (13)0.0347 (7)
H140.12890.42520.43270.042*
C150.2175 (3)0.3736 (2)0.36460 (13)0.0318 (6)
H15A0.14280.33990.35110.038*
H15B0.21640.43190.34640.038*
C160.5715 (3)0.33129 (19)0.35033 (12)0.0255 (6)
C170.7959 (3)0.3617 (2)0.31935 (14)0.0311 (6)
C180.8574 (3)0.2958 (3)0.3576 (2)0.0518 (10)
H18A0.80610.24180.35840.078*
H18B0.86220.32080.39470.078*
H18C0.94390.28210.34460.078*
C190.7847 (4)0.3250 (3)0.26108 (16)0.0478 (9)
H19A0.73270.27140.26160.072*
H19B0.87020.31120.24700.072*
H19C0.74410.36890.23730.072*
C200.8752 (3)0.4461 (2)0.31835 (15)0.0369 (7)
H20A0.83310.48970.29490.055*
H20B0.96060.43330.30380.055*
H20C0.88290.46940.35570.055*
C210.3644 (4)0.0305 (2)0.36758 (13)0.0378 (7)
C220.4947 (4)0.0212 (3)0.38043 (15)0.0451 (8)
H220.54640.07230.38430.054*
C230.5494 (5)−0.0614 (3)0.38766 (17)0.0558 (10)
H230.6376−0.06640.39650.067*
C240.4763 (6)−0.1352 (3)0.38198 (17)0.0620 (12)
H240.5144−0.19160.38580.074*
C250.3478 (5)−0.1284 (3)0.37081 (18)0.0601 (12)
H250.2969−0.18000.36790.072*
C260.2912 (4)−0.0445 (2)0.36356 (16)0.0503 (9)
H260.2024−0.04000.35590.060*
C270.6317 (3)0.10128 (19)0.21805 (13)0.0296 (6)
C280.7207 (3)0.0856 (2)0.25959 (14)0.0335 (7)
H280.69340.07220.29580.040*
C290.8505 (3)0.0899 (2)0.24673 (15)0.0363 (7)
C300.8922 (3)0.1106 (2)0.19463 (16)0.0385 (7)
H300.98100.11480.18670.046*
C310.8013 (3)0.1254 (2)0.15382 (15)0.0365 (7)
C320.6711 (3)0.12013 (19)0.16489 (13)0.0318 (6)
H320.61000.12930.13660.038*
C330.1663 (3)0.2464 (2)0.12927 (13)0.0331 (7)
C340.2152 (3)0.1651 (2)0.11265 (14)0.0341 (7)
H340.25830.12780.13790.041*
C350.1993 (3)0.1402 (2)0.05848 (14)0.0361 (7)
C360.1413 (3)0.1945 (2)0.02003 (14)0.0396 (7)
H360.13300.1769−0.01720.047*
C370.0960 (3)0.2754 (2)0.03776 (15)0.0396 (7)
C380.1059 (3)0.3019 (2)0.09184 (15)0.0377 (7)
H380.07210.35700.10330.045*
N10.3352 (2)0.32700 (16)0.34911 (10)0.0269 (5)
N20.6672 (2)0.38628 (17)0.33856 (10)0.0271 (5)
H1N0.651 (4)0.440 (3)0.3363 (14)0.033*
N30.4523 (2)0.13695 (16)0.27536 (10)0.0278 (5)
H2N0.510 (4)0.166 (2)0.2945 (15)0.033*
O20.58152 (19)0.24951 (13)0.34972 (9)0.0289 (4)
O30.4177 (2)0.06170 (14)0.19576 (9)0.0328 (5)
O40.2526 (2)0.22167 (14)0.21627 (9)0.0322 (4)
O50.1021 (2)0.32785 (16)0.20878 (10)0.0423 (6)
Cl10.96231 (8)0.07105 (6)0.29804 (4)0.0481 (2)
Cl20.85139 (8)0.14928 (6)0.08777 (4)0.0480 (2)
Cl30.24876 (9)0.03602 (6)0.03774 (4)0.0465 (2)
Cl40.01738 (10)0.34193 (6)−0.00931 (4)0.0512 (2)
U11U22U33U12U13U23
C10.0196 (12)0.0323 (15)0.0355 (15)0.0010 (11)−0.0018 (12)−0.0014 (12)
C20.0208 (13)0.0339 (15)0.0352 (15)−0.0008 (12)−0.0024 (12)−0.0035 (12)
C30.0211 (13)0.0293 (14)0.0370 (15)−0.0019 (11)0.0016 (12)−0.0011 (12)
C40.0298 (15)0.0296 (15)0.0395 (16)−0.0019 (12)0.0019 (13)−0.0014 (13)
C50.0230 (14)0.0251 (13)0.0369 (15)0.0010 (11)−0.0014 (12)−0.0036 (12)
C60.0234 (14)0.0331 (16)0.0452 (17)0.0005 (13)−0.0064 (13)0.0006 (13)
C70.0178 (13)0.0267 (14)0.0362 (15)−0.0012 (11)0.0003 (11)−0.0007 (11)
C80.0228 (13)0.0319 (15)0.0364 (15)−0.0038 (12)−0.0005 (12)−0.0019 (12)
C90.0299 (15)0.0318 (15)0.0365 (16)−0.0012 (13)0.0037 (13)0.0006 (12)
C100.0424 (18)0.0403 (18)0.0370 (16)−0.0024 (14)0.0042 (14)−0.0017 (14)
C110.054 (2)0.047 (2)0.0358 (17)−0.0020 (16)0.0048 (15)0.0032 (15)
C120.052 (2)0.052 (2)0.048 (2)−0.0100 (18)0.0109 (17)0.0066 (17)
C130.0362 (17)0.0417 (18)0.0442 (18)−0.0095 (14)0.0065 (15)0.0009 (15)
C140.0253 (14)0.0387 (17)0.0401 (17)0.0016 (13)0.0059 (12)−0.0006 (13)
C150.0199 (14)0.0337 (16)0.0417 (17)0.0023 (12)0.0016 (12)−0.0036 (13)
C160.0180 (12)0.0292 (15)0.0292 (13)−0.0016 (11)−0.0014 (10)0.0004 (11)
C170.0180 (13)0.0272 (14)0.0480 (17)−0.0006 (11)0.0045 (12)0.0042 (13)
C180.0219 (15)0.046 (2)0.088 (3)−0.0029 (14)−0.0063 (17)0.026 (2)
C190.049 (2)0.044 (2)0.051 (2)−0.0072 (16)0.0195 (17)−0.0077 (16)
C200.0225 (14)0.0325 (16)0.0557 (19)−0.0026 (12)0.0025 (14)0.0076 (14)
C210.0472 (19)0.0304 (16)0.0358 (16)−0.0009 (15)0.0006 (14)0.0002 (13)
C220.049 (2)0.0421 (19)0.0438 (19)0.0047 (16)−0.0052 (16)0.0011 (15)
C230.062 (3)0.053 (2)0.052 (2)0.012 (2)−0.006 (2)0.0051 (18)
C240.096 (4)0.042 (2)0.048 (2)0.016 (2)−0.006 (2)0.0015 (17)
C250.091 (4)0.0340 (19)0.056 (2)−0.012 (2)−0.006 (2)−0.0001 (17)
C260.066 (3)0.0379 (19)0.0471 (19)−0.0139 (18)−0.0119 (18)0.0062 (16)
C270.0217 (14)0.0256 (14)0.0416 (16)0.0008 (11)0.0001 (12)−0.0066 (12)
C280.0255 (15)0.0314 (15)0.0437 (17)0.0010 (12)0.0003 (12)−0.0056 (13)
C290.0214 (14)0.0329 (16)0.0546 (19)0.0036 (12)−0.0048 (14)−0.0096 (14)
C300.0255 (15)0.0283 (15)0.062 (2)0.0003 (12)0.0058 (14)−0.0119 (14)
C310.0311 (16)0.0308 (16)0.0476 (18)−0.0032 (12)0.0060 (14)−0.0076 (14)
C320.0256 (14)0.0263 (14)0.0436 (17)−0.0019 (12)0.0003 (13)−0.0057 (12)
C330.0241 (14)0.0340 (16)0.0411 (16)−0.0003 (13)−0.0041 (13)0.0017 (13)
C340.0244 (14)0.0362 (16)0.0418 (16)0.0002 (12)−0.0024 (12)0.0021 (14)
C350.0332 (16)0.0354 (16)0.0397 (16)−0.0014 (13)−0.0010 (13)0.0010 (13)
C360.0371 (18)0.0451 (18)0.0365 (17)−0.0038 (15)−0.0013 (14)0.0021 (14)
C370.0325 (16)0.0402 (18)0.0460 (18)−0.0040 (14)−0.0052 (14)0.0090 (15)
C380.0287 (15)0.0354 (17)0.0491 (19)−0.0012 (13)−0.0061 (14)0.0028 (14)
N10.0177 (11)0.0294 (12)0.0336 (12)−0.0025 (10)0.0009 (10)−0.0021 (10)
N20.0201 (11)0.0249 (12)0.0364 (13)−0.0005 (10)0.0006 (10)0.0002 (10)
N30.0198 (11)0.0277 (12)0.0358 (13)0.0006 (10)−0.0018 (10)−0.0039 (10)
O20.0217 (9)0.0253 (10)0.0395 (11)−0.0011 (8)−0.0028 (8)0.0001 (8)
O30.0254 (10)0.0300 (11)0.0432 (12)0.0010 (8)−0.0046 (9)−0.0076 (9)
O40.0250 (10)0.0356 (11)0.0361 (11)0.0038 (9)−0.0054 (9)−0.0030 (9)
O50.0332 (11)0.0429 (13)0.0507 (14)0.0121 (10)−0.0066 (10)−0.0081 (11)
Cl10.0266 (4)0.0544 (5)0.0632 (5)0.0083 (4)−0.0099 (4)−0.0119 (4)
Cl20.0419 (4)0.0490 (5)0.0529 (5)−0.0093 (4)0.0139 (4)−0.0051 (4)
Cl30.0514 (5)0.0428 (4)0.0452 (4)0.0061 (4)0.0023 (4)−0.0044 (3)
Cl40.0557 (5)0.0457 (5)0.0523 (5)0.0007 (4)−0.0155 (4)0.0113 (4)
C1—N11.463 (4)C17—N21.473 (4)
C1—C21.522 (4)C17—C181.512 (5)
C1—H1A0.9900C17—C201.527 (4)
C1—H1B0.9900C17—C191.530 (5)
C2—O41.453 (4)C18—H18A0.9800
C2—C31.540 (4)C18—H18B0.9800
C2—H21.0000C18—H18C0.9800
C3—N31.462 (4)C19—H19A0.9800
C3—C41.537 (4)C19—H19B0.9800
C3—H31.0000C19—H19C0.9800
C4—C211.511 (4)C20—H20A0.9800
C4—H4A0.9900C20—H20B0.9800
C4—H4B0.9900C20—H20C0.9800
C5—O31.238 (4)C21—C261.376 (5)
C5—N31.335 (4)C21—C221.405 (5)
C5—C271.505 (4)C22—C231.391 (5)
C6—O51.206 (4)C22—H220.9500
C6—O41.348 (4)C23—C241.364 (7)
C6—C331.491 (5)C23—H230.9500
C7—N11.467 (3)C24—C251.374 (8)
C7—C161.526 (4)C24—H240.9500
C7—C81.532 (4)C25—C261.416 (6)
C7—H71.0000C25—H250.9500
C8—C91.530 (4)C26—H260.9500
C8—H8A0.9900C27—C321.389 (5)
C8—H8B0.9900C27—C281.395 (4)
C9—C101.527 (4)C28—C291.395 (4)
C9—C141.540 (4)C28—H280.9500
C9—H91.0000C29—C301.379 (5)
C10—C111.523 (5)C29—Cl11.735 (3)
C10—H10A0.9900C30—C311.393 (5)
C10—H10B0.9900C30—H300.9500
C11—C121.525 (6)C31—C321.391 (4)
C11—H11A0.9900C31—Cl21.731 (4)
C11—H11B0.9900C32—H320.9500
C12—C131.534 (5)C33—C381.394 (5)
C12—H12A0.9900C33—C341.397 (5)
C12—H12B0.9900C34—C351.383 (5)
C13—C141.522 (5)C34—H340.9500
C13—H13A0.9900C35—C361.388 (5)
C13—H13B0.9900C35—Cl31.740 (3)
C14—C151.521 (4)C36—C371.385 (5)
C14—H141.0000C36—H360.9500
C15—N11.470 (4)C37—C381.382 (5)
C15—H15A0.9900C37—Cl41.736 (3)
C15—H15B0.9900C38—H380.9500
C16—O21.247 (4)N2—H1N0.84 (4)
C16—N21.335 (4)N3—H2N0.88 (4)
N1—C1—C2111.1 (2)N2—C17—C20106.8 (2)
N1—C1—H1A109.4C18—C17—C20109.6 (3)
C2—C1—H1A109.4N2—C17—C19108.5 (3)
N1—C1—H1B109.4C18—C17—C19111.4 (3)
C2—C1—H1B109.4C20—C17—C19109.4 (3)
H1A—C1—H1B108.0C17—C18—H18A109.5
O4—C2—C1108.1 (2)C17—C18—H18B109.5
O4—C2—C3103.1 (2)H18A—C18—H18B109.5
C1—C2—C3116.5 (2)C17—C18—H18C109.5
O4—C2—H2109.6H18A—C18—H18C109.5
C1—C2—H2109.6H18B—C18—H18C109.5
C3—C2—H2109.6C17—C19—H19A109.5
N3—C3—C4109.5 (2)C17—C19—H19B109.5
N3—C3—C2110.0 (2)H19A—C19—H19B109.5
C4—C3—C2114.9 (2)C17—C19—H19C109.5
N3—C3—H3107.4H19A—C19—H19C109.5
C4—C3—H3107.4H19B—C19—H19C109.5
C2—C3—H3107.4C17—C20—H20A109.5
C21—C4—C3111.2 (3)C17—C20—H20B109.5
C21—C4—H4A109.4H20A—C20—H20B109.5
C3—C4—H4A109.4C17—C20—H20C109.5
C21—C4—H4B109.4H20A—C20—H20C109.5
C3—C4—H4B109.4H20B—C20—H20C109.5
H4A—C4—H4B108.0C26—C21—C22118.2 (3)
O3—C5—N3124.7 (3)C26—C21—C4122.0 (3)
O3—C5—C27120.0 (3)C22—C21—C4119.7 (3)
N3—C5—C27115.3 (3)C23—C22—C21121.2 (4)
O5—C6—O4124.5 (3)C23—C22—H22119.4
O5—C6—C33124.9 (3)C21—C22—H22119.4
O4—C6—C33110.5 (3)C24—C23—C22119.9 (4)
N1—C7—C16111.3 (2)C24—C23—H23120.0
N1—C7—C8109.8 (2)C22—C23—H23120.0
C16—C7—C8109.1 (2)C23—C24—C25120.4 (4)
N1—C7—H7108.9C23—C24—H24119.8
C16—C7—H7108.9C25—C24—H24119.8
C8—C7—H7108.9C24—C25—C26120.1 (4)
C9—C8—C7111.1 (2)C24—C25—H25120.0
C9—C8—H8A109.4C26—C25—H25120.0
C7—C8—H8A109.4C21—C26—C25120.3 (4)
C9—C8—H8B109.4C21—C26—H26119.9
C7—C8—H8B109.4C25—C26—H26119.9
H8A—C8—H8B108.0C32—C27—C28121.0 (3)
C10—C9—C8113.7 (3)C32—C27—C5117.6 (3)
C10—C9—C14111.0 (3)C28—C27—C5121.4 (3)
C8—C9—C14110.0 (2)C29—C28—C27118.5 (3)
C10—C9—H9107.3C29—C28—H28120.7
C8—C9—H9107.3C27—C28—H28120.7
C14—C9—H9107.3C30—C29—C28121.7 (3)
C11—C10—C9112.7 (3)C30—C29—Cl1119.2 (2)
C11—C10—H10A109.1C28—C29—Cl1119.1 (3)
C9—C10—H10A109.1C29—C30—C31118.6 (3)
C11—C10—H10B109.1C29—C30—H30120.7
C9—C10—H10B109.1C31—C30—H30120.7
H10A—C10—H10B107.8C32—C31—C30121.3 (3)
C10—C11—C12111.5 (3)C32—C31—Cl2119.2 (3)
C10—C11—H11A109.3C30—C31—Cl2119.4 (3)
C12—C11—H11A109.3C27—C32—C31118.9 (3)
C10—C11—H11B109.3C27—C32—H32120.6
C12—C11—H11B109.3C31—C32—H32120.6
H11A—C11—H11B108.0C38—C33—C34120.8 (3)
C11—C12—C13110.8 (3)C38—C33—C6118.8 (3)
C11—C12—H12A109.5C34—C33—C6120.3 (3)
C13—C12—H12A109.5C35—C34—C33118.3 (3)
C11—C12—H12B109.5C35—C34—H34120.8
C13—C12—H12B109.5C33—C34—H34120.8
H12A—C12—H12B108.1C34—C35—C36122.3 (3)
C14—C13—C12110.6 (3)C34—C35—Cl3119.3 (3)
C14—C13—H13A109.5C36—C35—Cl3118.3 (3)
C12—C13—H13A109.5C37—C36—C35117.8 (3)
C14—C13—H13B109.5C37—C36—H36121.1
C12—C13—H13B109.5C35—C36—H36121.1
H13A—C13—H13B108.1C38—C37—C36122.1 (3)
C15—C14—C13112.6 (3)C38—C37—Cl4119.7 (3)
C15—C14—C9109.5 (2)C36—C37—Cl4118.2 (3)
C13—C14—C9112.0 (3)C37—C38—C33118.7 (3)
C15—C14—H14107.5C37—C38—H38120.6
C13—C14—H14107.5C33—C38—H38120.6
C9—C14—H14107.5C1—N1—C7112.5 (2)
N1—C15—C14112.9 (3)C1—N1—C15108.8 (2)
N1—C15—H15A109.0C7—N1—C15110.1 (2)
C14—C15—H15A109.0C16—N2—C17126.5 (3)
N1—C15—H15B109.0C16—N2—H1N118 (3)
C14—C15—H15B109.0C17—N2—H1N114 (3)
H15A—C15—H15B107.8C5—N3—C3123.4 (3)
O2—C16—N2123.9 (3)C5—N3—H2N118 (2)
O2—C16—C7122.1 (2)C3—N3—H2N119 (2)
N2—C16—C7114.0 (2)C6—O4—C2119.3 (2)
N2—C17—C18111.1 (3)
N1—C1—C2—O4175.5 (2)C27—C28—C29—Cl1179.7 (2)
N1—C1—C2—C3−69.1 (3)C28—C29—C30—C31−1.6 (5)
O4—C2—C3—N368.7 (3)Cl1—C29—C30—C31179.8 (2)
C1—C2—C3—N3−49.5 (3)C29—C30—C31—C320.5 (5)
O4—C2—C3—C4−167.3 (2)C29—C30—C31—Cl2−178.7 (2)
C1—C2—C3—C474.4 (3)C28—C27—C32—C31−1.6 (5)
N3—C3—C4—C21−59.4 (3)C5—C27—C32—C31178.7 (3)
C2—C3—C4—C21176.4 (3)C30—C31—C32—C271.1 (5)
N1—C7—C8—C9−58.6 (3)Cl2—C31—C32—C27−179.7 (2)
C16—C7—C8—C9179.2 (2)O5—C6—C33—C3815.3 (5)
C7—C8—C9—C10179.9 (3)O4—C6—C33—C38−167.0 (3)
C7—C8—C9—C1454.7 (3)O5—C6—C33—C34−159.9 (3)
C8—C9—C10—C11−72.6 (4)O4—C6—C33—C3417.8 (4)
C14—C9—C10—C1152.1 (4)C38—C33—C34—C35−1.6 (5)
C9—C10—C11—C12−53.9 (4)C6—C33—C34—C35173.5 (3)
C10—C11—C12—C1355.9 (4)C33—C34—C35—C362.6 (5)
C11—C12—C13—C14−57.1 (4)C33—C34—C35—Cl3−175.4 (2)
C12—C13—C14—C15−179.9 (3)C34—C35—C36—C37−1.5 (5)
C12—C13—C14—C956.2 (4)Cl3—C35—C36—C37176.5 (3)
C10—C9—C14—C15−179.2 (3)C35—C36—C37—C38−0.7 (5)
C8—C9—C14—C15−52.4 (3)C35—C36—C37—Cl4−177.4 (3)
C10—C9—C14—C13−53.5 (4)C36—C37—C38—C331.7 (5)
C8—C9—C14—C1373.3 (3)Cl4—C37—C38—C33178.3 (2)
C13—C14—C15—N1−69.1 (3)C34—C33—C38—C37−0.5 (5)
C9—C14—C15—N156.2 (3)C6—C33—C38—C37−175.6 (3)
N1—C7—C16—O2−35.0 (4)C2—C1—N1—C7153.7 (2)
C8—C7—C16—O286.4 (3)C2—C1—N1—C15−84.0 (3)
N1—C7—C16—N2147.1 (2)C16—C7—N1—C1−57.2 (3)
C8—C7—C16—N2−91.6 (3)C8—C7—N1—C1−178.2 (2)
C3—C4—C21—C26−85.2 (4)C16—C7—N1—C15−178.8 (2)
C3—C4—C21—C2290.5 (4)C8—C7—N1—C1560.3 (3)
C26—C21—C22—C231.5 (5)C14—C15—N1—C1175.6 (2)
C4—C21—C22—C23−174.3 (3)C14—C15—N1—C7−60.7 (3)
C21—C22—C23—C240.4 (6)O2—C16—N2—C174.7 (5)
C22—C23—C24—C25−2.0 (6)C7—C16—N2—C17−177.5 (3)
C23—C24—C25—C261.8 (7)C18—C17—N2—C16−53.9 (4)
C22—C21—C26—C25−1.7 (5)C20—C17—N2—C16−173.3 (3)
C4—C21—C26—C25174.0 (4)C19—C17—N2—C1668.9 (4)
C24—C25—C26—C210.1 (6)O3—C5—N3—C30.8 (5)
O3—C5—C27—C3242.1 (4)C27—C5—N3—C3180.0 (3)
N3—C5—C27—C32−137.1 (3)C4—C3—N3—C5136.6 (3)
O3—C5—C27—C28−137.6 (3)C2—C3—N3—C5−96.3 (3)
N3—C5—C27—C2843.2 (4)O5—C6—O4—C24.8 (5)
C32—C27—C28—C290.5 (5)C33—C6—O4—C2−172.9 (2)
C5—C27—C28—C29−179.8 (3)C1—C2—O4—C6−78.2 (3)
C27—C28—C29—C301.2 (5)C3—C2—O4—C6158.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N···O3i0.84 (4)2.13 (4)2.931 (3)160 (3)
N3—H2N···O20.88 (4)1.99 (4)2.834 (3)159 (3)
C4—H4A···N10.992.553.149 (4)119
C18—H18A···O20.982.362.975 (4)120
C34—H34···O30.952.403.324 (4)163
  9 in total

1.  Macrocyclic inhibitors of the malarial aspartic proteases plasmepsin I, II, and IV.

Authors:  Karolina Ersmark; Martin Nervall; Hugo Gutiérrez-de-Terán; Elizabeth Hamelink; Linda K Janka; Jose C Clemente; Ben M Dunn; Adolf Gogoll; Bertil Samuelsson; Johan Qvist; Anders Hallberg
Journal:  Bioorg Med Chem       Date:  2005-11-22       Impact factor: 3.641

2.  Synthesis, biological evaluation, and modeling studies of inhibitors aimed at the malarial proteases plasmepsins I and II.

Authors:  Daniel Muthas; Daniel Nöteberg; Yogesh A Sabnis; Elizabeth Hamelink; Lotta Vrang; Bertil Samuelsson; Anders Karlén; Anders Hallberg
Journal:  Bioorg Med Chem       Date:  2005-09-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Aspartic protease inhibitors containing tertiary alcohol transition-state mimics.

Authors:  Hitesh V Motwani; Maria De Rosa; Luke R Odell; Anders Hallberg; Mats Larhed
Journal:  Eur J Med Chem       Date:  2014-11-20       Impact factor: 6.514

5.  Fighting malaria: structure-guided discovery of nonpeptidomimetic plasmepsin inhibitors.

Authors:  Anja P Huizing; Milon Mondal; Anna K H Hirsch
Journal:  J Med Chem       Date:  2015-03-17       Impact factor: 7.446

Review 6.  Aspartic proteases of Plasmodium falciparum and other parasitic protozoa as drug targets.

Authors:  G H Coombs; D E Goldberg; M Klemba; C Berry; J Kay; J C Mottram
Journal:  Trends Parasitol       Date:  2001-11

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

9.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.