Literature DB >> 28638651

A metastable polymorphic form of the anti-fungal anilino-pyrimidine active pyrimethanil.

Alex R Eberlin1, Christopher S Frampton2.   

Abstract

A second metastable form of the title compound, C12H13N3 (systematic name: 4,6-dimethyl-N-phenyl-pyrimidin-2-amine), was isolated from an attempted co-crystallization experiment with meso-erythriol in dimethyl sulfoxide (DMSO). The crystals of form 2 at 120 K are monoclinic, space group P21/n with Z' = 4 compared to the previously reported triclinic form with Z' = 2 [Sun et al. (2011 ▸). Acta Chim. Sin.69, 1909-1914]. The four independent mol-ecules in the asymmetric unit form two discrete dimeric units through a concerted pair of N-H⋯N hydrogen bonds with a graph-set notation of R22(8). The origin of the polymorphic behaviour is revealed in that the conformation of each dimer present in the asymmetric unit of the structure is unique and determined by the rotation of the second mol-ecule in the dimer with respect to the first.

Entities:  

Keywords:  crystal structure; hydrogen bonding; polymorphism; pyrimethanil

Year:  2017        PMID: 28638651      PMCID: PMC5458316          DOI: 10.1107/S2056989017007563

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

(4,6-Dimethyl-pyrimidin-2-yl)-phenyl-amine, pyrimethanil (1) is a broad spectrum systemic fungicide from the anilino­pyrimidine class of agents, which also include cyprodinil and mepanipyrim. It was discovered in 1987 (Buhmann et al., 1988 ▸) and is marketed under the trade name SCALA®. Anilino­pyrimidines are used extensively for protection against leaf moulds and other fungi. In a recent paper (Sun et al., 2011 ▸), the synthesis and electronic properties of pyrimethanil were presented, including a discussion on the atomic charges, total energy and frontier orbital energy. As part of this wider study, the crystal structure of pyrimethanil was determined at 295 K and used as an initial starting model in the structural optimization process. The structure was triclinic, space group P , with Z′ = 2, with two independent mol­ecules in the asymmetric unit. The two independent mol­ecules form a dimeric structural unit through a concerted pair of N—H⋯N hydrogen bonds with a graph-set notation of (8). We have recently been investigating the co-crystallization behaviour of pyrimethanil in an attempt to modify the physicochemical properties of the bulk solid material to improve its overall performance. During the course of one of the co-crystallization screens, the crystal structure of a second polymorphic crystal form of pyrimethanil was determined on a crystal that was isolated from the reaction product of an attempted co-crystallization experiment with meso-erythriol in di­methyl­sulfoxide (DMSO). In this communication, we report the single crystal X-ray structure of this second, metastable, monoclinic polymorphic form of pyrimethanil at 120 K.

Structural commentary

The crystal structure of form 2 of pyrimethanil is monoclinic, space group P21/n with four independent mol­ecules of pyrimethanil in the asymmetric unit, (Z′ = 4). For clarity, the independent mol­ecules are labelled with suffixes A, B, C and D. The four independent mol­ecules arrange themselves into two dimeric units A–B and C–D, each through a concerted pair of N—H⋯N hydrogen bonds with a graph-set notation of (8), in a similar arrangement to the dimeric structure found in form 1. Figs. 1 ▸ and 2 ▸ show displacement ellipsoid plots for the two dimers, A–B and C–D and hydrogen-bond distances and angles are given in Table 1 ▸. The phenyl and pyrimidine rings defined by atoms C1–C6 and N2/N3/C7–C10, respectively, for mol­ecules A to D are approximately co-planar. A calculated least-squares plane through the six atoms of the phenyl ring and the six atoms of the pyrimidine ring gave r.m.s. deviations from planarity and a calculated dihedral angle between them as follows: mol­ecule A, 0.0019 Å, 0.0050 Å, 10.8 (1)°; mol­ecule B, 0.0076 Å, 0.0102 Å, 14.8 (1)°; mol­ecule C, 0.0049 Å, 0.0153 Å, 8.2 (1)° and mol­ecule D, 0.0081 Å, 0.0105 Å, 13.5 (1)°. The small variation in the angular range of the dihedral angles appears consistent with that observed for the other pyrimethanil structures discussed below, 7.5-13.1°.
Figure 1

View of the A–B dimer of the asymmetric unit with atom labelling. Ellipsoids are drawn at the 50% probability level. The inter­molecular N—H⋯N hydrogen bonds are shown as dashed lines.

Figure 2

View of the C–D dimer of the asymmetric unit with atom labelling. Ellipsoids are drawn at the 50% probability level. The inter­molecular N—H⋯N hydrogen bonds are shown as dashed lines.

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1AB⋯N3B 0.91 (3)2.11 (3)2.997 (3)165 (2)
N1B—H1BB⋯N3A 0.97 (3)2.08 (3)3.022 (3)162 (3)
N1C—H1CB⋯N3D 0.94 (3)2.05 (3)2.975 (3)166 (3)
N1D—H1DB⋯N3C 0.92 (3)2.08 (3)2.987 (3)167 (3)

Supra­molecular features

A view of the crystal packing down the a-axis is shown in Fig. 3 ▸. The (8) hydrogen-bonded rings defined by atoms N3A/C7A/N1A/H1AB/N3B/C7B/N1B/H1BB and N3C/C7C/N1C/H1CB/N3D/C7D/N1D/H1DB for the two dimers are twisted such that each dimer forms a cross pattern, with a dihedral angle of 42.8 (2)° for dimer A–B and 47.5 (2)° for dimer C–D. These dihedral angles are between planes C6A/N1A/C7A and C6B/N1B/C7B for A–B and C6C/N1C/C7C and C6D/N1D/C7D for C–D. The angles are somewhat reduced in magnitude when compared to the equivalent calculation performed for form 1, 55.7 (1)°. Fig. 4 ▸ shows an overlay of the two dimeric units in form 2, dimer A–B is shown in violet and C–D in blue, which reveals the origin of the polymorphic behaviour and in turn the reason why Z′ = 4. In this figure, mol­ecules A and C have been overlaid (r.m.s. deviation = 0.181Å) using the standard routine in Mercury (Macrae et al., 2008 ▸). It can be seen that mol­ecule B in the A–B dimer is rotated 134° with respect to mol­ecule D in the C–D dimer, thus making each dimer unique. It is inter­esting to note that the dimer found in the structure of form 1 has a similar conformation/orientation to the C–D dimer in the present structure. There are no further significant inter­molecular contacts and the crystal packing between dimers appears to be driven largely by van der Waals forces only.
Figure 3

View of the crystal packing down the a axis. Only the nitro­gen heteroatom H atoms are shown for clarity. The inter­molecular N—H⋯N hydrogen bonds (see Table 1 ▸) are shown as dotted lines.

Figure 4

View of the overlay of dimer A–B (violet) and dimer C–D (blue).

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.38 update February 2017; Groom et al., 2016 ▸) for both the pyrimethanil framework and its protonated counterpart yielded three hits, all of which were genuine examples of the material under investigation. Only one entry was found which related to an example that was not a co-crystal, solvate or salt form and that was for the triclinic, P , Z′ = 2, form 1 polymorph (CELNOY; Sun et al., 2011 ▸. The remaining two entries were salt forms where the basic nitro­gen atom (N3) had been protonated. These examples are the mono­chloro­acetate (MIRYOC; Li et al., 2008 ▸) and the p-toluene­sulfonate (XEZFUE; Li et al., 2007 ▸). One further example, which is not yet available in the current release of the database, is an exciting 1:1 co-crystal of pyrimethanil with a second anti­fungal active, di­thia­non (SAJJAR; Pöppler et al., 2017 ▸). This material is currently being marketed under the trade name FABAN®.

Synthesis and crystallization

Crystals of form 2 of pyrimethanil were isolated from the reaction product of an attempted co-crystallization screen with meso-erythriol in di­methyl­sulfoxide (DMSO). The screen consisted of approximately 20 mg of pyrimethanil being dispensed per vial along with 20 volumes of the appropriate solvent, approx. 400 µl, at room temperature. The appropriate coformer (ratio 1:1) was also dispensed into the vials in the same manner along with a further 20 volumes of solvent. For the vials that gave clear solutions, these were filtered through a 4 µm filter to remove any potential seeds that may remain in the solution. The vials were placed in a platform shaker incubator (Heidolph Titramax/Inkubator 1000) and subjected to a series of heating–cooling cycles under shaking from room temperature (RT) to 323 K (8 h cycles; heating to 323 K for 4 h and then cooling to RT for a further 4 h) for a maximum of 48 h. The resulting solutions were then allowed to evaporate slowly over a period of 14 days. The solid materials obtained from the screen were analysed by X-ray powder diffraction and were investigated further if they displayed diffraction patterns that were clearly different from that of form 1 or the coformer itself. Unfortunately, it has not been possible thus far to repeat the above experiment to generate more form 2 material, leading us to conclude that form 2 is a metastable form with respect to form 1.

Refinement

Crystal data, data collection, and structure refinement details are summarized in Table 2 ▸. The positional coordinates of the N-bound H atoms were all located from a Fourier-difference map and freely refined. All the remaining H atoms were placed geometrically in idealized positions and refined using a riding model (including free rotation about the methyl CC bond), with C—H = 0.95–0.99 Å and U iso = 1.5U eq(C) for methyl groups and 1.2U eq(C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC12H13N3
M r 199.25
Crystal system, space groupMonoclinic, P21/n
Temperature (K)120
a, b, c (Å)10.5351 (4), 19.1686 (7), 22.1162 (8)
β (°)102.778 (4)
V3)4355.6 (3)
Z 16
Radiation typeMo Kα
μ (mm−1)0.08
Crystal size (mm)0.20 × 0.15 × 0.10
 
Data collection
DiffractometerAgilent SuperNova, Dual, Cu at zero, Atlas
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku, 2015)
T min, T max 0.960, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections16540, 7552, 4410
R int 0.053
(sin θ/λ)max−1)0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.056, 0.149, 1.00
No. of reflections7552
No. of parameters565
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.24, −0.29

Computer programs: CrysAlis PRO (Rigaku, 2015 ▸), SHELXD2014 (Sheldrick, 2015 ▸), SHELXL2014 (Sheldrick, 2015 ▸), SHELXTL (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989017007563/hb7679sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017007563/hb7679Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017007563/hb7679Isup3.cml CCDC reference: 1549998 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H13N3F(000) = 1696
Mr = 199.25Dx = 1.215 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.5351 (4) ÅCell parameters from 2876 reflections
b = 19.1686 (7) Åθ = 2.9–24.5°
c = 22.1162 (8) ŵ = 0.08 mm1
β = 102.778 (4)°T = 120 K
V = 4355.6 (3) Å3Block, colourless
Z = 160.20 × 0.15 × 0.10 mm
Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer7552 independent reflections
Radiation source: SuperNova (Mo) X-ray Source4410 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.053
Detector resolution: 10.5598 pixels mm-1θmax = 25.0°, θmin = 2.9°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis PRO; Rigaku, 2015)k = −22→18
Tmin = 0.960, Tmax = 1.000l = −25→26
16540 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.056H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.149w = 1/[σ2(Fo2) + (0.055P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.002
7552 reflectionsΔρmax = 0.24 e Å3
565 parametersΔρmin = −0.29 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
N1A0.6124 (2)0.75456 (11)0.10435 (11)0.0263 (6)
H1AB0.698 (3)0.7460 (13)0.1205 (12)0.025 (7)*
N2A0.4761 (2)0.84979 (12)0.06807 (10)0.0261 (6)
N3A0.6823 (2)0.86154 (11)0.14057 (10)0.0256 (5)
C1A0.5890 (3)0.63127 (14)0.10191 (13)0.0280 (7)
H1AA0.67630.62880.12510.034*
C2A0.5192 (3)0.57049 (15)0.08619 (13)0.0328 (7)
H2AA0.55860.52670.09880.039*
C3A0.3916 (3)0.57303 (15)0.05197 (12)0.0308 (7)
H3AA0.34310.53140.04100.037*
C4A0.3367 (3)0.63763 (15)0.03413 (12)0.0304 (7)
H4AA0.24970.63990.01060.036*
C5A0.4056 (2)0.69886 (15)0.04986 (12)0.0276 (7)
H5AA0.36590.74250.03720.033*
C6A0.5331 (2)0.69632 (14)0.08422 (12)0.0234 (6)
C7A0.5858 (3)0.82446 (14)0.10375 (13)0.0245 (7)
C8A0.4627 (3)0.91995 (15)0.06878 (13)0.0289 (7)
C9A0.5570 (3)0.96202 (15)0.10415 (13)0.0309 (7)
H9AA0.54661.01130.10400.037*
C10A0.6671 (3)0.93098 (14)0.13983 (13)0.0286 (7)
C11A0.3416 (3)0.94925 (16)0.02772 (14)0.0381 (8)
H11A0.26510.92560.03640.057*
H11B0.34460.9420−0.01580.057*
H11C0.33610.99930.03580.057*
C12A0.7746 (3)0.97312 (15)0.17935 (14)0.0375 (8)
H12A0.85640.94700.18560.056*
H12B0.75360.98240.21960.056*
H12C0.78381.01740.15860.056*
N1B0.9217 (2)0.79655 (12)0.22174 (11)0.0244 (5)
H1BB0.837 (3)0.8075 (16)0.1961 (14)0.050 (9)*
N2B1.0990 (2)0.72567 (11)0.21211 (10)0.0216 (5)
N3B0.9013 (2)0.73288 (11)0.13366 (10)0.0232 (5)
C1B0.8653 (3)0.85002 (14)0.30962 (13)0.0295 (7)
H1BA0.77860.85350.28580.035*
C2B0.8942 (3)0.87347 (14)0.36999 (13)0.0316 (7)
H2BA0.82750.89270.38760.038*
C3B1.0206 (3)0.86906 (14)0.40526 (14)0.0326 (7)
H3BA1.04060.88480.44700.039*
C4B1.1167 (3)0.84163 (14)0.37901 (13)0.0299 (7)
H4BA1.20330.83860.40300.036*
C5B1.0887 (3)0.81842 (14)0.31799 (13)0.0261 (7)
H5BA1.15630.80070.30020.031*
C6B0.9619 (2)0.82115 (13)0.28306 (12)0.0222 (6)
C7B0.9786 (2)0.74942 (14)0.18899 (12)0.0220 (6)
C8B1.1475 (2)0.68135 (14)0.17509 (12)0.0229 (6)
C9B1.0768 (3)0.66375 (14)0.11680 (13)0.0247 (7)
H9BA1.11280.63390.09070.030*
C10B0.9522 (3)0.69043 (14)0.09717 (12)0.0233 (6)
C11B1.2817 (2)0.65336 (15)0.20046 (13)0.0304 (7)
H11D1.34040.69190.21690.046*
H11E1.31340.62980.16730.046*
H11F1.27910.62010.23380.046*
C12B0.8698 (3)0.67444 (15)0.03397 (12)0.0307 (7)
H12D0.78280.69440.03030.046*
H12E0.86270.62380.02830.046*
H12F0.91030.69470.00220.046*
N1C1.1500 (2)1.08100 (12)0.13645 (11)0.0274 (6)
H1CB1.239 (3)1.0913 (16)0.1519 (15)0.058 (10)*
N2C1.0238 (2)0.98550 (12)0.09055 (10)0.0285 (6)
N3C1.2273 (2)0.97203 (12)0.16432 (10)0.0254 (5)
C1C1.1158 (3)1.20305 (14)0.13836 (12)0.0280 (7)
H1CA1.20151.20660.16320.034*
C2C1.0416 (3)1.26280 (15)0.12328 (13)0.0333 (7)
H2CA1.07681.30690.13770.040*
C3C0.9166 (3)1.25855 (16)0.08734 (13)0.0360 (8)
H3CA0.86471.29930.07760.043*
C4C0.8683 (3)1.19384 (17)0.06585 (13)0.0357 (8)
H4CA0.78331.19070.04020.043*
C5C0.9410 (3)1.13327 (16)0.08091 (13)0.0314 (7)
H5CA0.90561.08920.06640.038*
C6C1.0665 (3)1.13804 (14)0.11756 (12)0.0247 (7)
C7C1.1299 (3)1.01019 (14)0.12912 (13)0.0252 (7)
C8C1.0168 (3)0.91572 (15)0.08390 (13)0.0284 (7)
C9C1.1147 (3)0.87277 (15)0.11533 (13)0.0302 (7)
H9CA1.11060.82380.10890.036*
C10C1.2192 (3)0.90258 (14)0.15653 (13)0.0269 (7)
C11C0.8976 (3)0.88820 (16)0.04020 (13)0.0352 (8)
H11G0.87280.92000.00480.053*
H11H0.82610.88470.06180.053*
H11I0.91610.84190.02540.053*
C12C1.3266 (3)0.85994 (15)0.19480 (13)0.0332 (7)
H12G1.40790.88670.20230.050*
H12H1.33720.81680.17260.050*
H12I1.30490.84840.23450.050*
N1D1.4540 (2)1.03911 (12)0.24960 (11)0.0242 (5)
H1DB1.378 (3)1.0251 (15)0.2234 (13)0.039 (9)*
N2D1.6334 (2)1.10956 (11)0.24278 (10)0.0240 (5)
N3D1.4352 (2)1.10768 (11)0.16432 (10)0.0227 (5)
C1D1.3924 (3)0.98318 (14)0.33508 (13)0.0276 (7)
H1DA1.30720.97880.30990.033*
C2D1.4181 (3)0.95921 (14)0.39511 (13)0.0290 (7)
H2DA1.35010.93910.41120.035*
C3D1.5421 (3)0.96405 (14)0.43236 (13)0.0304 (7)
H3DA1.55960.94780.47390.036*
C4D1.6398 (3)0.99302 (14)0.40792 (13)0.0285 (7)
H4DA1.72530.99610.43310.034*
C5D1.6162 (2)1.01761 (14)0.34767 (12)0.0252 (7)
H5DA1.68501.03680.33150.030*
C6D1.4905 (3)1.01402 (13)0.31083 (12)0.0227 (6)
C7D1.5119 (2)1.08765 (13)0.21896 (12)0.0211 (6)
C8D1.6839 (3)1.15457 (14)0.20693 (13)0.0259 (7)
C9D1.6144 (3)1.17560 (14)0.14969 (13)0.0264 (7)
H9DA1.65211.20590.12460.032*
C10D1.4874 (3)1.15146 (13)0.12938 (12)0.0227 (6)
C11D1.8201 (3)1.17911 (16)0.23313 (14)0.0356 (8)
H11J1.87461.13930.25030.053*
H11K1.81951.21330.26600.053*
H11L1.85531.20080.20020.053*
C12D1.4050 (3)1.17113 (14)0.06759 (12)0.0280 (7)
H12J1.32151.18950.07310.042*
H12K1.38971.12990.04080.042*
H12L1.44991.20690.04840.042*
U11U22U33U12U13U23
N1A0.0219 (14)0.0189 (13)0.0347 (15)0.0032 (11)−0.0007 (12)−0.0004 (11)
N2A0.0253 (13)0.0271 (14)0.0271 (14)0.0056 (10)0.0085 (12)0.0052 (11)
N3A0.0276 (13)0.0204 (13)0.0298 (14)0.0016 (10)0.0081 (12)−0.0037 (11)
C1A0.0240 (15)0.0266 (16)0.0311 (17)0.0024 (13)0.0011 (14)0.0006 (14)
C2A0.0337 (18)0.0251 (16)0.0398 (19)0.0014 (14)0.0085 (16)−0.0032 (14)
C3A0.0364 (18)0.0294 (17)0.0262 (17)−0.0101 (14)0.0059 (15)−0.0022 (14)
C4A0.0252 (16)0.0427 (19)0.0214 (16)−0.0045 (14)0.0009 (14)0.0023 (14)
C5A0.0265 (16)0.0295 (17)0.0251 (17)0.0034 (13)0.0021 (14)0.0050 (13)
C6A0.0224 (15)0.0254 (16)0.0221 (16)0.0013 (12)0.0041 (13)−0.0002 (13)
C7A0.0283 (16)0.0245 (16)0.0232 (17)0.0037 (13)0.0110 (14)0.0022 (13)
C8A0.0303 (16)0.0313 (18)0.0291 (18)0.0097 (14)0.0152 (15)0.0083 (14)
C9A0.0382 (18)0.0221 (16)0.0357 (19)0.0080 (14)0.0150 (16)0.0023 (14)
C10A0.0340 (16)0.0251 (16)0.0310 (18)0.0019 (14)0.0164 (15)−0.0032 (14)
C11A0.0343 (17)0.0355 (18)0.044 (2)0.0104 (14)0.0087 (16)0.0124 (16)
C12A0.0437 (19)0.0260 (17)0.043 (2)−0.0022 (14)0.0105 (17)−0.0082 (15)
N1B0.0214 (13)0.0265 (13)0.0235 (14)0.0034 (11)0.0011 (12)−0.0061 (11)
N2B0.0212 (12)0.0215 (12)0.0229 (13)0.0011 (10)0.0062 (11)0.0006 (10)
N3B0.0262 (12)0.0225 (13)0.0203 (13)−0.0026 (10)0.0038 (11)−0.0029 (11)
C1B0.0302 (16)0.0261 (16)0.0338 (18)0.0027 (13)0.0105 (15)−0.0036 (14)
C2B0.0387 (18)0.0273 (17)0.0317 (19)0.0012 (14)0.0138 (16)−0.0061 (14)
C3B0.046 (2)0.0250 (16)0.0273 (17)−0.0012 (14)0.0084 (16)−0.0056 (14)
C4B0.0303 (16)0.0299 (17)0.0280 (18)−0.0013 (13)0.0034 (14)−0.0032 (14)
C5B0.0274 (16)0.0236 (15)0.0281 (17)0.0008 (13)0.0081 (14)−0.0024 (13)
C6B0.0251 (16)0.0171 (14)0.0234 (16)−0.0022 (12)0.0030 (14)−0.0005 (12)
C7B0.0221 (15)0.0205 (14)0.0240 (16)−0.0028 (12)0.0062 (14)0.0005 (13)
C8B0.0239 (15)0.0225 (15)0.0233 (16)0.0022 (12)0.0076 (14)0.0053 (13)
C9B0.0284 (16)0.0231 (15)0.0250 (17)0.0006 (12)0.0109 (14)−0.0038 (13)
C10B0.0288 (15)0.0207 (15)0.0212 (16)−0.0027 (12)0.0073 (14)0.0024 (13)
C11B0.0278 (16)0.0327 (17)0.0294 (17)0.0072 (13)0.0032 (14)−0.0010 (14)
C12B0.0320 (16)0.0324 (17)0.0267 (17)0.0003 (14)0.0043 (14)−0.0022 (14)
N1C0.0240 (14)0.0253 (14)0.0301 (15)−0.0001 (11)−0.0002 (12)−0.0008 (11)
N2C0.0263 (13)0.0323 (14)0.0247 (14)−0.0054 (11)0.0005 (12)0.0002 (11)
N3C0.0243 (13)0.0256 (14)0.0248 (14)−0.0040 (10)0.0022 (11)0.0030 (11)
C1C0.0257 (15)0.0320 (17)0.0253 (17)−0.0002 (13)0.0035 (14)0.0034 (14)
C2C0.0367 (18)0.0299 (17)0.0337 (18)0.0038 (14)0.0086 (16)0.0043 (15)
C3C0.0395 (19)0.0359 (19)0.0348 (19)0.0111 (15)0.0130 (17)0.0109 (15)
C4C0.0289 (17)0.051 (2)0.0263 (18)0.0053 (15)0.0037 (15)0.0039 (16)
C5C0.0263 (16)0.0366 (18)0.0310 (18)0.0012 (14)0.0057 (15)−0.0008 (14)
C6C0.0254 (16)0.0293 (17)0.0195 (16)0.0028 (13)0.0055 (14)0.0032 (13)
C7C0.0232 (16)0.0297 (17)0.0218 (16)−0.0043 (13)0.0030 (14)0.0020 (13)
C8C0.0285 (16)0.0322 (18)0.0250 (17)−0.0099 (14)0.0071 (14)0.0019 (14)
C9C0.0362 (17)0.0253 (16)0.0283 (17)−0.0101 (14)0.0056 (15)0.0017 (14)
C10C0.0293 (16)0.0268 (17)0.0254 (17)−0.0035 (13)0.0079 (14)0.0033 (13)
C11C0.0334 (17)0.0402 (19)0.0289 (17)−0.0138 (14)0.0003 (15)−0.0041 (15)
C12C0.0367 (17)0.0281 (17)0.0327 (18)−0.0041 (14)0.0033 (15)0.0062 (14)
N1D0.0219 (13)0.0243 (13)0.0228 (14)−0.0046 (11)−0.0032 (12)0.0054 (11)
N2D0.0226 (13)0.0231 (13)0.0264 (13)−0.0004 (10)0.0059 (11)−0.0020 (11)
N3D0.0238 (12)0.0205 (12)0.0235 (13)0.0034 (10)0.0048 (11)0.0039 (11)
C1D0.0222 (15)0.0250 (16)0.0329 (18)−0.0002 (12)0.0006 (14)0.0049 (14)
C2D0.0318 (17)0.0255 (16)0.0310 (18)−0.0005 (13)0.0095 (15)0.0070 (14)
C3D0.0424 (19)0.0229 (16)0.0258 (17)0.0080 (14)0.0076 (16)0.0027 (13)
C4D0.0258 (16)0.0296 (17)0.0278 (17)0.0061 (13)0.0007 (14)−0.0003 (14)
C5D0.0201 (15)0.0281 (16)0.0256 (17)−0.0009 (12)0.0012 (14)−0.0007 (13)
C6D0.0303 (16)0.0163 (14)0.0211 (16)0.0021 (12)0.0052 (14)−0.0001 (12)
C7D0.0229 (15)0.0171 (14)0.0238 (16)0.0021 (12)0.0059 (14)−0.0031 (13)
C8D0.0270 (15)0.0265 (16)0.0254 (17)−0.0021 (13)0.0083 (14)−0.0026 (14)
C9D0.0288 (16)0.0274 (16)0.0259 (17)−0.0020 (13)0.0119 (15)0.0000 (13)
C10D0.0289 (16)0.0177 (14)0.0222 (16)0.0043 (12)0.0072 (14)−0.0033 (12)
C11D0.0291 (16)0.0438 (19)0.0348 (19)−0.0069 (14)0.0089 (15)0.0015 (15)
C12D0.0337 (16)0.0231 (16)0.0269 (17)0.0004 (13)0.0059 (14)0.0012 (13)
N1A—C7A1.368 (3)N1C—C7C1.378 (3)
N1A—C6A1.407 (3)N1C—C6C1.408 (3)
N1A—H1AB0.91 (3)N1C—H1CB0.94 (3)
N2A—C7A1.338 (3)N2C—C7C1.334 (3)
N2A—C8A1.353 (3)N2C—C8C1.346 (3)
N3A—C10A1.340 (3)N3C—C10C1.343 (3)
N3A—C7A1.354 (3)N3C—C7C1.357 (3)
C1A—C2A1.380 (4)C1C—C2C1.385 (4)
C1A—C6A1.398 (4)C1C—C6C1.389 (4)
C1A—H1AA0.9500C1C—H1CA0.9500
C2A—C3A1.390 (4)C2C—C3C1.382 (4)
C2A—H2AA0.9500C2C—H2CA0.9500
C3A—C4A1.387 (4)C3C—C4C1.384 (4)
C3A—H3AA0.9500C3C—H3CA0.9500
C4A—C5A1.383 (4)C4C—C5C1.391 (4)
C4A—H4AA0.9500C4C—H4CA0.9500
C5A—C6A1.390 (4)C5C—C6C1.392 (4)
C5A—H5AA0.9500C5C—H5CA0.9500
C8A—C9A1.380 (4)C8C—C9C1.382 (4)
C8A—C11A1.501 (4)C8C—C11C1.501 (4)
C9A—C10A1.385 (4)C9C—C10C1.387 (4)
C9A—H9AA0.9500C9C—H9CA0.9500
C10A—C12A1.504 (4)C10C—C12C1.497 (4)
C11A—H11A0.9800C11C—H11G0.9800
C11A—H11B0.9800C11C—H11H0.9800
C11A—H11C0.9800C11C—H11I0.9800
C12A—H12A0.9800C12C—H12G0.9800
C12A—H12B0.9800C12C—H12H0.9800
C12A—H12C0.9800C12C—H12I0.9800
N1B—C7B1.375 (3)N1D—C7D1.371 (3)
N1B—C6B1.410 (3)N1D—C6D1.408 (3)
N1B—H1BB0.97 (3)N1D—H1DB0.92 (3)
N2B—C7B1.338 (3)N2D—C7D1.339 (3)
N2B—C8B1.356 (3)N2D—C8D1.357 (3)
N3B—C10B1.339 (3)N3D—C10D1.339 (3)
N3B—C7B1.349 (3)N3D—C7D1.352 (3)
C1B—C2B1.378 (4)C1D—C2D1.374 (4)
C1B—C6B1.397 (3)C1D—C6D1.397 (3)
C1B—H1BA0.9500C1D—H1DA0.9500
C2B—C3B1.389 (4)C2D—C3D1.384 (4)
C2B—H2BA0.9500C2D—H2DA0.9500
C3B—C4B1.378 (4)C3D—C4D1.380 (4)
C3B—H3BA0.9500C3D—H3DA0.9500
C4B—C5B1.389 (4)C4D—C5D1.383 (4)
C4B—H4BA0.9500C4D—H4DA0.9500
C5B—C6B1.388 (4)C5D—C6D1.394 (4)
C5B—H5BA0.9500C5D—H5DA0.9500
C8B—C9B1.381 (4)C8D—C9D1.375 (4)
C8B—C11B1.500 (4)C8D—C11D1.500 (4)
C9B—C10B1.386 (4)C9D—C10D1.392 (4)
C9B—H9BA0.9500C9D—H9DA0.9500
C10B—C12B1.505 (4)C10D—C12D1.496 (4)
C11B—H11D0.9800C11D—H11J0.9800
C11B—H11E0.9800C11D—H11K0.9800
C11B—H11F0.9800C11D—H11L0.9800
C12B—H12D0.9800C12D—H12J0.9800
C12B—H12E0.9800C12D—H12K0.9800
C12B—H12F0.9800C12D—H12L0.9800
C7A—N1A—C6A131.9 (2)C7C—N1C—C6C131.4 (3)
C7A—N1A—H1AB111.3 (17)C7C—N1C—H1CB111 (2)
C6A—N1A—H1AB116.8 (16)C6C—N1C—H1CB117 (2)
C7A—N2A—C8A115.7 (3)C7C—N2C—C8C116.1 (3)
C10A—N3A—C7A116.2 (3)C10C—N3C—C7C116.3 (2)
C2A—C1A—C6A121.0 (3)C2C—C1C—C6C120.8 (3)
C2A—C1A—H1AA119.5C2C—C1C—H1CA119.6
C6A—C1A—H1AA119.5C6C—C1C—H1CA119.6
C1A—C2A—C3A120.3 (3)C3C—C2C—C1C120.3 (3)
C1A—C2A—H2AA119.8C3C—C2C—H2CA119.8
C3A—C2A—H2AA119.8C1C—C2C—H2CA119.8
C4A—C3A—C2A118.6 (3)C2C—C3C—C4C118.8 (3)
C4A—C3A—H3AA120.7C2C—C3C—H3CA120.6
C2A—C3A—H3AA120.7C4C—C3C—H3CA120.6
C5A—C4A—C3A121.6 (3)C3C—C4C—C5C121.6 (3)
C5A—C4A—H4AA119.2C3C—C4C—H4CA119.2
C3A—C4A—H4AA119.2C5C—C4C—H4CA119.2
C4A—C5A—C6A119.8 (3)C4C—C5C—C6C119.1 (3)
C4A—C5A—H5AA120.1C4C—C5C—H5CA120.4
C6A—C5A—H5AA120.1C6C—C5C—H5CA120.4
C5A—C6A—C1A118.7 (3)C1C—C6C—C5C119.3 (3)
C5A—C6A—N1A125.4 (3)C1C—C6C—N1C115.8 (2)
C1A—C6A—N1A115.8 (2)C5C—C6C—N1C124.9 (3)
N2A—C7A—N3A126.8 (2)N2C—C7C—N3C126.6 (3)
N2A—C7A—N1A120.6 (3)N2C—C7C—N1C120.7 (3)
N3A—C7A—N1A112.5 (2)N3C—C7C—N1C112.7 (2)
N2A—C8A—C9A121.5 (3)N2C—C8C—C9C121.3 (3)
N2A—C8A—C11A116.2 (3)N2C—C8C—C11C116.0 (3)
C9A—C8A—C11A122.2 (3)C9C—C8C—C11C122.7 (3)
C8A—C9A—C10A118.6 (3)C8C—C9C—C10C118.7 (3)
C8A—C9A—H9AA120.7C8C—C9C—H9CA120.6
C10A—C9A—H9AA120.7C10C—C9C—H9CA120.6
N3A—C10A—C9A121.1 (3)N3C—C10C—C9C120.8 (3)
N3A—C10A—C12A117.0 (3)N3C—C10C—C12C116.8 (3)
C9A—C10A—C12A121.9 (3)C9C—C10C—C12C122.5 (3)
C8A—C11A—H11A109.5C8C—C11C—H11G109.5
C8A—C11A—H11B109.5C8C—C11C—H11H109.5
H11A—C11A—H11B109.5H11G—C11C—H11H109.5
C8A—C11A—H11C109.5C8C—C11C—H11I109.5
H11A—C11A—H11C109.5H11G—C11C—H11I109.5
H11B—C11A—H11C109.5H11H—C11C—H11I109.5
C10A—C12A—H12A109.5C10C—C12C—H12G109.5
C10A—C12A—H12B109.5C10C—C12C—H12H109.5
H12A—C12A—H12B109.5H12G—C12C—H12H109.5
C10A—C12A—H12C109.5C10C—C12C—H12I109.5
H12A—C12A—H12C109.5H12G—C12C—H12I109.5
H12B—C12A—H12C109.5H12H—C12C—H12I109.5
C7B—N1B—C6B130.8 (2)C7D—N1D—C6D130.6 (3)
C7B—N1B—H1BB106.7 (18)C7D—N1D—H1DB108.0 (17)
C6B—N1B—H1BB122.1 (17)C6D—N1D—H1DB121.4 (17)
C7B—N2B—C8B115.8 (2)C7D—N2D—C8D115.7 (2)
C10B—N3B—C7B116.6 (2)C10D—N3D—C7D116.9 (2)
C2B—C1B—C6B120.7 (3)C2D—C1D—C6D120.5 (3)
C2B—C1B—H1BA119.6C2D—C1D—H1DA119.8
C6B—C1B—H1BA119.6C6D—C1D—H1DA119.8
C1B—C2B—C3B120.3 (3)C1D—C2D—C3D120.8 (3)
C1B—C2B—H2BA119.9C1D—C2D—H2DA119.6
C3B—C2B—H2BA119.9C3D—C2D—H2DA119.6
C4B—C3B—C2B119.3 (3)C4D—C3D—C2D118.7 (3)
C4B—C3B—H3BA120.4C4D—C3D—H3DA120.6
C2B—C3B—H3BA120.4C2D—C3D—H3DA120.6
C3B—C4B—C5B120.9 (3)C3D—C4D—C5D121.6 (3)
C3B—C4B—H4BA119.5C3D—C4D—H4DA119.2
C5B—C4B—H4BA119.5C5D—C4D—H4DA119.2
C6B—C5B—C4B120.0 (2)C4D—C5D—C6D119.4 (2)
C6B—C5B—H5BA120.0C4D—C5D—H5DA120.3
C4B—C5B—H5BA120.0C6D—C5D—H5DA120.3
C5B—C6B—C1B118.8 (3)C5D—C6D—C1D119.0 (2)
C5B—C6B—N1B124.8 (2)C5D—C6D—N1D124.6 (2)
C1B—C6B—N1B116.4 (2)C1D—C6D—N1D116.5 (2)
N2B—C7B—N3B126.7 (2)N2D—C7D—N3D126.3 (2)
N2B—C7B—N1B120.6 (3)N2D—C7D—N1D120.6 (3)
N3B—C7B—N1B112.7 (2)N3D—C7D—N1D113.0 (2)
N2B—C8B—C9B121.3 (2)N2D—C8D—C9D121.8 (2)
N2B—C8B—C11B116.6 (2)N2D—C8D—C11D116.0 (3)
C9B—C8B—C11B122.1 (2)C9D—C8D—C11D122.2 (2)
C8B—C9B—C10B118.7 (2)C8D—C9D—C10D118.5 (2)
C8B—C9B—H9BA120.6C8D—C9D—H9DA120.7
C10B—C9B—H9BA120.6C10D—C9D—H9DA120.7
N3B—C10B—C9B120.9 (3)N3D—C10D—C9D120.7 (3)
N3B—C10B—C12B117.3 (2)N3D—C10D—C12D117.1 (2)
C9B—C10B—C12B121.8 (2)C9D—C10D—C12D122.2 (2)
C8B—C11B—H11D109.5C8D—C11D—H11J109.5
C8B—C11B—H11E109.5C8D—C11D—H11K109.5
H11D—C11B—H11E109.5H11J—C11D—H11K109.5
C8B—C11B—H11F109.5C8D—C11D—H11L109.5
H11D—C11B—H11F109.5H11J—C11D—H11L109.5
H11E—C11B—H11F109.5H11K—C11D—H11L109.5
C10B—C12B—H12D109.5C10D—C12D—H12J109.5
C10B—C12B—H12E109.5C10D—C12D—H12K109.5
H12D—C12B—H12E109.5H12J—C12D—H12K109.5
C10B—C12B—H12F109.5C10D—C12D—H12L109.5
H12D—C12B—H12F109.5H12J—C12D—H12L109.5
H12E—C12B—H12F109.5H12K—C12D—H12L109.5
C6A—C1A—C2A—C3A0.4 (4)C6C—C1C—C2C—C3C0.3 (4)
C1A—C2A—C3A—C4A0.1 (4)C1C—C2C—C3C—C4C−1.2 (4)
C2A—C3A—C4A—C5A−0.3 (4)C2C—C3C—C4C—C5C1.7 (4)
C3A—C4A—C5A—C6A0.2 (4)C3C—C4C—C5C—C6C−1.2 (4)
C4A—C5A—C6A—C1A0.3 (4)C2C—C1C—C6C—C5C0.2 (4)
C4A—C5A—C6A—N1A−178.5 (2)C2C—C1C—C6C—N1C−179.2 (2)
C2A—C1A—C6A—C5A−0.5 (4)C4C—C5C—C6C—C1C0.2 (4)
C2A—C1A—C6A—N1A178.3 (2)C4C—C5C—C6C—N1C179.6 (2)
C7A—N1A—C6A—C5A9.4 (4)C7C—N1C—C6C—C1C173.8 (3)
C7A—N1A—C6A—C1A−169.3 (3)C7C—N1C—C6C—C5C−5.6 (4)
C8A—N2A—C7A—N3A1.0 (4)C8C—N2C—C7C—N3C−3.5 (4)
C8A—N2A—C7A—N1A−176.9 (2)C8C—N2C—C7C—N1C176.3 (2)
C10A—N3A—C7A—N2A−1.8 (4)C10C—N3C—C7C—N2C4.3 (4)
C10A—N3A—C7A—N1A176.3 (2)C10C—N3C—C7C—N1C−175.6 (2)
C6A—N1A—C7A—N2A−16.4 (4)C6C—N1C—C7C—N2C12.0 (4)
C6A—N1A—C7A—N3A165.3 (2)C6C—N1C—C7C—N3C−168.1 (2)
C7A—N2A—C8A—C9A0.2 (3)C7C—N2C—C8C—C9C−0.2 (4)
C7A—N2A—C8A—C11A178.5 (2)C7C—N2C—C8C—C11C−179.7 (2)
N2A—C8A—C9A—C10A−0.4 (4)N2C—C8C—C9C—C10C2.9 (4)
C11A—C8A—C9A—C10A−178.7 (2)C11C—C8C—C9C—C10C−177.7 (2)
C7A—N3A—C10A—C9A1.4 (3)C7C—N3C—C10C—C9C−1.2 (3)
C7A—N3A—C10A—C12A−178.7 (2)C7C—N3C—C10C—C12C179.6 (2)
C8A—C9A—C10A—N3A−0.4 (4)C8C—C9C—C10C—N3C−2.1 (4)
C8A—C9A—C10A—C12A179.7 (2)C8C—C9C—C10C—C12C177.1 (2)
C6B—C1B—C2B—C3B0.4 (4)C6D—C1D—C2D—C3D−1.1 (4)
C1B—C2B—C3B—C4B0.6 (4)C1D—C2D—C3D—C4D−0.4 (4)
C2B—C3B—C4B—C5B−0.1 (4)C2D—C3D—C4D—C5D0.6 (4)
C3B—C4B—C5B—C6B−1.5 (4)C3D—C4D—C5D—C6D0.9 (4)
C4B—C5B—C6B—C1B2.5 (4)C4D—C5D—C6D—C1D−2.4 (4)
C4B—C5B—C6B—N1B−177.4 (2)C4D—C5D—C6D—N1D178.1 (2)
C2B—C1B—C6B—C5B−1.9 (4)C2D—C1D—C6D—C5D2.5 (4)
C2B—C1B—C6B—N1B177.9 (2)C2D—C1D—C6D—N1D−177.9 (2)
C7B—N1B—C6B—C5B20.7 (4)C7D—N1D—C6D—C5D−21.4 (4)
C7B—N1B—C6B—C1B−159.1 (2)C7D—N1D—C6D—C1D159.0 (2)
C8B—N2B—C7B—N3B1.1 (4)C8D—N2D—C7D—N3D−2.2 (4)
C8B—N2B—C7B—N1B−177.7 (2)C8D—N2D—C7D—N1D176.3 (2)
C10B—N3B—C7B—N2B−2.7 (4)C10D—N3D—C7D—N2D2.9 (4)
C10B—N3B—C7B—N1B176.2 (2)C10D—N3D—C7D—N1D−175.6 (2)
C6B—N1B—C7B—N2B−9.0 (4)C6D—N1D—C7D—N2D13.2 (4)
C6B—N1B—C7B—N3B172.0 (2)C6D—N1D—C7D—N3D−168.1 (2)
C7B—N2B—C8B—C9B1.4 (3)C7D—N2D—C8D—C9D−0.5 (4)
C7B—N2B—C8B—C11B−179.2 (2)C7D—N2D—C8D—C11D−179.7 (2)
N2B—C8B—C9B—C10B−2.2 (4)N2D—C8D—C9D—C10D2.1 (4)
C11B—C8B—C9B—C10B178.5 (2)C11D—C8D—C9D—C10D−178.7 (2)
C7B—N3B—C10B—C9B1.8 (3)C7D—N3D—C10D—C9D−1.1 (3)
C7B—N3B—C10B—C12B−176.9 (2)C7D—N3D—C10D—C12D177.2 (2)
C8B—C9B—C10B—N3B0.5 (4)C8D—C9D—C10D—N3D−1.3 (4)
C8B—C9B—C10B—C12B179.1 (2)C8D—C9D—C10D—C12D−179.5 (2)
D—H···AD—HH···AD···AD—H···A
N1A—H1AB···N3B0.91 (3)2.11 (3)2.997 (3)165 (2)
N1B—H1BB···N3A0.97 (3)2.08 (3)3.022 (3)162 (3)
N1C—H1CB···N3D0.94 (3)2.05 (3)2.975 (3)166 (3)
N1D—H1DB···N3C0.92 (3)2.08 (3)2.987 (3)167 (3)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

3.  Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of dithianon and pyrimethanil.

Authors:  Ann Christin Pöppler; Emily K Corlett; Harriet Pearce; Mark P Seymour; Matthew Reid; Mark G Montgomery; Steven P Brown
Journal:  Acta Crystallogr C Struct Chem       Date:  2017-02-06       Impact factor: 1.172

4.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  4 in total
  1 in total

1.  Investigation of Novel Pesticides with Insecticidal and Antifungal Activities: Design, Synthesis and SAR Studies of Benzoylpyrimidinylurea Derivatives.

Authors:  Peiqi Chen; Xiangmin Song; Yongmei Fan; Weihao Kong; Hao Zhang; Ranfeng Sun
Journal:  Molecules       Date:  2018-08-31       Impact factor: 4.411

  1 in total

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