Literature DB >> 28635152

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs.

Hehua Liu1, Fusheng Shen2, Phensinee Haruehanroengra2, Qingqing Yao3, Yunshan Cheng1, Yiqing Chen1, Chun Yang1, Jing Zhang1, Baixing Wu3, Qiang Luo3, Ruixue Cui3, Jixi Li1, Jinbiao Ma3, Jia Sheng2, Jianhua Gan1.   

Abstract

Metal-mediated base pairs have been extensively utilized in many research fields, including genetic-code extension, novel therapeutics development, and nanodevice design. Compared to other cations, AgI is more flexible in pairing with natural base pairs. Herein, we present a DNA structure containing two C-AgI -C pairs and the first reported G-AgI -G pair in a short 8mer DNA strand. This structure not only provides detailed insight into these AgI -mediated base-pairing patterns in DNA, but also represents the first nonhelical DNA structure driven by heavy-metal ions, thus further contributing to the structural diversity of DNA. This unique complex structure is highly sequence-dependent, thus implying functional potentials as a new DNA aptamer that can bind and recognize silver ions. These results not only advance our understanding of the interactions between AgI and nucleobases, but also provide a unique structural component for the rational design of new DNA nanodevices.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA structures; metal-mediated base pairs; nonhelical DNA; structure elucidation; unnatural base pairs

Year:  2017        PMID: 28635152     DOI: 10.1002/anie.201704891

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  10 in total

1.  Nucleic acid nanomaterials: Silver-wired DNA.

Authors:  Pascal Auffinger; Eric Ennifar
Journal:  Nat Chem       Date:  2017-09-22       Impact factor: 24.427

2.  Structural Basis for Targeting T:T Mismatch with Triaminotriazine-Acridine Conjugate Induces a U-Shaped Head-to-Head Four-Way Junction in CTG Repeat DNA.

Authors:  Ching-Ming Chien; Pei-Ching Wu; Roshan Satange; Cheng-Chung Chang; Zi-Lun Lai; Lauren D Hagler; Steven C Zimmerman; Ming-Hon Hou
Journal:  J Am Chem Soc       Date:  2020-06-16       Impact factor: 15.419

Review 3.  Metal-mediated base pairs in parallel-stranded DNA.

Authors:  Jens Müller
Journal:  Beilstein J Org Chem       Date:  2017-12-13       Impact factor: 2.883

Review 4.  A survey of recent unusual high-resolution DNA structures provoked by mismatches, repeats and ligand binding.

Authors:  Roshan Satange; Chung-Ke Chang; Ming-Hon Hou
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

5.  Addressing the properties of "Metallo-DNA" with a Ag(i)-mediated supramolecular duplex.

Authors:  Liam Mistry; Osama El-Zubir; Gema Dura; William Clegg; Paul G Waddell; Thomas Pope; Werner A Hofer; Nick G Wright; Benjamin R Horrocks; Andrew Houlton
Journal:  Chem Sci       Date:  2019-02-08       Impact factor: 9.825

6.  Heterochiral DNA with Complementary Strands with α-d and β-d Configurations: Hydrogen-Bonded and Silver-Mediated Base Pairs with Impact of 7-Deazapurines Replacing Purines.

Authors:  Yingying Chai; Xiurong Guo; Peter Leonard; Frank Seela
Journal:  Chemistry       Date:  2020-09-30       Impact factor: 5.236

Review 7.  Structure and luminescence of DNA-templated silver clusters.

Authors:  Anna Gonzàlez-Rosell; Cecilia Cerretani; Peter Mastracco; Tom Vosch; Stacy M Copp
Journal:  Nanoscale Adv       Date:  2021-01-21

8.  HgII binds to C-T mismatches with high affinity.

Authors:  Olivia P Schmidt; Andrea S Benz; Guillaume Mata; Nathan W Luedtke
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

9.  High-resolution DNA quadruplex structure containing all the A-, G-, C-, T-tetrads.

Authors:  Hehua Liu; Rui Wang; Xiang Yu; Fusheng Shen; Wenxian Lan; Phensinee Haruehanroengra; Qingqing Yao; Jing Zhang; Yiqing Chen; Suhua Li; Baixing Wu; Lina Zheng; Jinbiao Ma; Jinzhong Lin; Chunyang Cao; Jixi Li; Jia Sheng; Jianhua Gan
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

10.  Short DNA Oligonucleotide as a Ag+ Binding Detector.

Authors:  Fusheng Shen; Song Mao; Johnsi Mathivanan; Ying Wu; Arun Richard Chandrasekaran; Hehua Liu; Jianhua Gan; Jia Sheng
Journal:  ACS Omega       Date:  2020-10-28
  10 in total

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