Literature DB >> 28629976

MAPBOT: Meta-analytic parcellation based on text, and its application to the human thalamus.

Rui Yuan1, Paul A Taylor2, Tara L Alvarez3, Durga Misra4, Bharat B Biswal5.   

Abstract

Meta-analysis of neuroimaging results has proven to be a popular and valuable method to study human brain functions. A number of studies have used meta-analysis to parcellate distinct brain regions. A popular way to perform meta-analysis is typically based on the reported activation coordinates from a number of published papers. However, in addition to the coordinates associated with the different brain regions, the text itself contains considerably amount of additional information. This textual information has been largely ignored in meta-analyses where it may be useful for simultaneously parcellating brain regions and studying their characteristics. By leveraging recent advances in document clustering techniques, we introduce an approach to parcellate the brain into meaningful regions primarily based on the text features present in a document from a large number of studies. This new method is called MAPBOT (Meta-Analytic Parcellation Based On Text). Here, we first describe how the method works and then the application case of understanding the sub-divisions of the thalamus. The thalamus was chosen because of the substantial body of research that has been reported studying this functional and structural structure for both healthy and clinical populations. However, MAPBOT is a general-purpose method that is applicable to parcellating any region(s) of the brain. The present study demonstrates the powerful utility of using text information from neuroimaging studies to parcellate brain regions.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Meta-analysis; Text Mining; Thalamus; Topic Mapping

Mesh:

Year:  2017        PMID: 28629976      PMCID: PMC6474778          DOI: 10.1016/j.neuroimage.2017.06.032

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  111 in total

Review 1.  Treatment of motor and non-motor features of Parkinson's disease with deep brain stimulation.

Authors:  Alfonso Fasano; Antonio Daniele; Alberto Albanese
Journal:  Lancet Neurol       Date:  2012-05       Impact factor: 44.182

2.  Prefrontal projections to the mediodorsal nucleus of the thalamus in the rhesus monkey.

Authors:  D F Siwek; D N Pandya
Journal:  J Comp Neurol       Date:  1991-10-22       Impact factor: 3.215

Review 3.  Synchrony in the interconnected circuitry of the thalamus and cerebral cortex.

Authors:  Edward G Jones
Journal:  Ann N Y Acad Sci       Date:  2009-03       Impact factor: 5.691

4.  Immunohistochemical evidence for a spinothalamic pathway co-containing cholecystokinin- and galanin-like immunoreactivities in the rat.

Authors:  G Ju; T Melander; S Ceccatelli; T Hökfelt; P Frey
Journal:  Neuroscience       Date:  1987-02       Impact factor: 3.590

Review 5.  Red nucleus: past and future.

Authors:  J Massion
Journal:  Behav Brain Res       Date:  1988 Apr-May       Impact factor: 3.332

6.  Reversible inactivation of the lateral dorsal thalamus disrupts hippocampal place representation and impairs spatial learning.

Authors:  S J Mizumori; D Y Miya; K E Ward
Journal:  Brain Res       Date:  1994-04-25       Impact factor: 3.252

7.  Pallidal and cerebellar afferents to pre-supplementary motor area thalamocortical neurons in the owl monkey: a multiple labeling study.

Authors:  S T Sakai; I Stepniewska; H X Qi; J H Kaas
Journal:  J Comp Neurol       Date:  2000-02-07       Impact factor: 3.215

8.  Characterization of the temporo-parietal junction by combining data-driven parcellation, complementary connectivity analyses, and functional decoding.

Authors:  Danilo Bzdok; Robert Langner; Leonhard Schilbach; Oliver Jakobs; Christian Roski; Svenja Caspers; Angela R Laird; Peter T Fox; Karl Zilles; Simon B Eickhoff
Journal:  Neuroimage       Date:  2013-05-17       Impact factor: 6.556

9.  Cortical and subcortical afferents to the amygdala of the rhesus monkey (Macaca mulatta).

Authors:  J P Aggleton; M J Burton; R E Passingham
Journal:  Brain Res       Date:  1980-05-26       Impact factor: 3.252

10.  Cortical connections of the rat lateral posterior thalamic nucleus.

Authors:  Hiroaki Kamishina; William L Conte; Sarika S Patel; Rachel J Tai; James V Corwin; Roger L Reep
Journal:  Brain Res       Date:  2009-02-07       Impact factor: 3.252

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Authors:  Fahd H Alhazmi; Derek Beaton; Hervé Abdi
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2.  Thalamic morphology predicts the onset of freezing of gait in Parkinson's disease.

Authors:  Nicholas D'Cruz; Griet Vervoort; Sima Chalavi; Bauke W Dijkstra; Moran Gilat; Alice Nieuwboer
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  2 in total

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