Literature DB >> 28628789

Challenges and opportunities in the high-resolution cryo-EM visualization of microtubules and their binding partners.

Eva Nogales1, Elizabeth H Kellogg2.   

Abstract

As non-crystallizable polymers, microtubules have been the target of cryo-electron microscopy (cryo-EM) studies since the technique was first established. Over the years, image processing strategies have been developed that take care of the unique, pseudo-helical symmetry of the microtubule. With recent progress in data quality and data processing, cryo-EM reconstructions are now reaching resolutions that allow the generation of atomic models of microtubules and the factors that bind them. These include cellular partners that contribute to microtubule cellular functions, or small ligands that interfere with those functions in the treatment of cancer. The stage is set to generate a family portrait for all identified microtubule interacting proteins and to use cryo-EM as a drug development tool in the targeting of tubulin.
Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2017        PMID: 28628789      PMCID: PMC5683913          DOI: 10.1016/j.sbi.2017.06.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  33 in total

1.  Microtubule structure at 8 A resolution.

Authors:  Huilin Li; David J DeRosier; William V Nicholson; Eva Nogales; Kenneth H Downing
Journal:  Structure       Date:  2002-10       Impact factor: 5.006

2.  A model for the microtubule-Ncd motor protein complex obtained by cryo-electron microscopy and image analysis.

Authors:  H Sosa; D P Dias; A Hoenger; M Whittaker; E Wilson-Kubalek; E Sablin; R J Fletterick; R D Vale; R A Milligan
Journal:  Cell       Date:  1997-07-25       Impact factor: 41.582

3.  Three-dimensional cryoelectron microscopy of 16-protofilament microtubules: structure, polarity, and interaction with motor proteins.

Authors:  K Hirose; W B Amos; A Lockhart; R A Cross; L A Amos
Journal:  J Struct Biol       Date:  1997-03       Impact factor: 2.867

4.  Near-atomic cryo-EM structure of PRC1 bound to the microtubule.

Authors:  Elizabeth H Kellogg; Stuart Howes; Shih-Chieh Ti; Erney Ramírez-Aportela; Tarun M Kapoor; Pablo Chacón; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-04       Impact factor: 11.205

5.  Multivalent Microtubule Recognition by Tubulin Tyrosine Ligase-like Family Glutamylases.

Authors:  Christopher P Garnham; Annapurna Vemu; Elizabeth M Wilson-Kubalek; Ian Yu; Agnieszka Szyk; Gabriel C Lander; Ronald A Milligan; Antonina Roll-Mecak
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

6.  Refinement of protein structures into low-resolution density maps using rosetta.

Authors:  Frank DiMaio; Michael D Tyka; Matthew L Baker; Wah Chiu; David Baker
Journal:  J Mol Biol       Date:  2009-07-08       Impact factor: 5.469

7.  Insights into the Distinct Mechanisms of Action of Taxane and Non-Taxane Microtubule Stabilizers from Cryo-EM Structures.

Authors:  Elizabeth H Kellogg; Nisreen M A Hejab; Stuart Howes; Peter Northcote; John H Miller; J Fernando Díaz; Kenneth H Downing; Eva Nogales
Journal:  J Mol Biol       Date:  2017-01-17       Impact factor: 5.469

8.  A new protocol to accurately determine microtubule lattice seam location.

Authors:  Rui Zhang; Eva Nogales
Journal:  J Struct Biol       Date:  2015-09-28       Impact factor: 2.867

9.  Mutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends.

Authors:  Shih-Chieh Ti; Melissa C Pamula; Stuart C Howes; Christian Duellberg; Nicholas I Cade; Ralph E Kleiner; Scott Forth; Thomas Surrey; Eva Nogales; Tarun M Kapoor
Journal:  Dev Cell       Date:  2016-04-04       Impact factor: 12.270

10.  High-resolution comparative modeling with RosettaCM.

Authors:  Yifan Song; Frank DiMaio; Ray Yu-Ruei Wang; David Kim; Chris Miles; Tj Brunette; James Thompson; David Baker
Journal:  Structure       Date:  2013-09-12       Impact factor: 5.006

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  6 in total

1.  What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models.

Authors:  Michael A Cianfrocco; Elizabeth H Kellogg
Journal:  J Chem Inf Model       Date:  2020-03-09       Impact factor: 4.956

2.  Unravelling the covalent binding of zampanolide and taccalonolide AJ to a minimalist representation of a human microtubule.

Authors:  Pedro A Sánchez-Murcia; Alberto Mills; Álvaro Cortés-Cabrera; Federico Gago
Journal:  J Comput Aided Mol Des       Date:  2019-05-31       Impact factor: 3.686

Review 3.  Utilization of Photoaffinity Labeling to Investigate Binding of Microtubule Stabilizing Agents to P-Glycoprotein and β-Tubulin.

Authors:  Chia-Ping Huang Yang; Susan Band Horwitz; Hayley M McDaid
Journal:  J Nat Prod       Date:  2022-03-03       Impact factor: 4.803

Review 4.  Tau Filaments and the Development of Positron Emission Tomography Tracers.

Authors:  Michel Goedert; Yoshiki Yamaguchi; Sushil K Mishra; Makoto Higuchi; Naruhiko Sahara
Journal:  Front Neurol       Date:  2018-02-15       Impact factor: 4.003

5.  Microtubule architecture in vitro and in cells revealed by cryo-electron tomography.

Authors:  Joseph Atherton; Melissa Stouffer; Fiona Francis; Carolyn A Moores
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-11       Impact factor: 7.652

6.  Selection and Characterization of Artificial Proteins Targeting the Tubulin α Subunit.

Authors:  Valérie Campanacci; Agathe Urvoas; Tanja Consolati; Soraya Cantos-Fernandes; Magali Aumont-Nicaise; Marie Valerio-Lepiniec; Thomas Surrey; Philippe Minard; Benoît Gigant
Journal:  Structure       Date:  2019-01-17       Impact factor: 5.006

  6 in total

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