Literature DB >> 28628207

Engineered Polymerases with Altered Substrate Specificity: Expression and Purification.

Ali Nikoomanzar1, Matthew R Dunn1, John C Chaput1.   

Abstract

Polymerase engineering is making it possible to synthesize xeno-nucleic acid polymers (XNAs) with diverse backbone structures and chemical functionality. The ability to copy genetic information back and forth between DNA and XNA has led to a new field of science known as synthetic genetics, which aims to study the genetic concepts of heredity and evolution in artificial genetic polymers. Since many of the polymerases needed to synthesize XNA polymers are not available commercially, researchers must express and purify these enzymes as recombinant proteins from E. coli. This unit details the steps needed to express, purify, and evaluate the activity of engineered polymerases with altered substrate recognition properties. The protocol requires 6 days to complete and will produce ∼20 mg of pure, nuclease-free polymerase per liter of E. coli bacterial culture. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  aptamer; polymerase; protein expression and purification; xeno-nucleic acid (XNA)

Mesh:

Substances:

Year:  2017        PMID: 28628207     DOI: 10.1002/cpnc.33

Source DB:  PubMed          Journal:  Curr Protoc Nucleic Acid Chem        ISSN: 1934-9270


  7 in total

1.  Introducing a New Bond-Forming Activity in an Archaeal DNA Polymerase by Structure-Guided Enzyme Redesign.

Authors:  Tushar Aggarwal; William A Hansen; Jonathan Hong; Abir Ganguly; Darrin M York; Sagar D Khare; Enver Cagri Izgu
Journal:  ACS Chem Biol       Date:  2022-07-01       Impact factor: 4.634

2.  "Click handle"-modified 2'-deoxy-2'-fluoroarabino nucleic acid as a synthetic genetic polymer capable of post-polymerization functionalization.

Authors:  Kevin B Wu; Christopher J A Skrodzki; Qiwen Su; Jennifer Lin; Jia Niu
Journal:  Chem Sci       Date:  2022-05-17       Impact factor: 9.969

3.  DNA synthesis from diphosphate substrates by DNA polymerases.

Authors:  Cassandra R Burke; Andrej Lupták
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-16       Impact factor: 11.205

4.  Evolution of a General RNA-Cleaving FANA Enzyme.

Authors:  Yajun Wang; Arlene K Ngor; Ali Nikoomanzar; John C Chaput
Journal:  Nat Commun       Date:  2018-11-29       Impact factor: 14.919

5.  Click-Particle Display for Base-Modified Aptamer Discovery.

Authors:  Chelsea K L Gordon; Diana Wu; Anusha Pusuluri; Trevor A Feagin; Andrew T Csordas; Michael S Eisenstein; Craig J Hawker; Jia Niu; Hyongsok Tom Soh
Journal:  ACS Chem Biol       Date:  2019-10-12       Impact factor: 5.100

6.  Transliteration of synthetic genetic enzymes.

Authors:  Yajun Wang; Xiaolin Liu; Mouhamad Shehabat; Nicholas Chim; John C Chaput
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

7.  In Vitro Selection of an ATP-Binding TNA Aptamer.

Authors:  Li Zhang; John C Chaput
Journal:  Molecules       Date:  2020-09-13       Impact factor: 4.411

  7 in total

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