Literature DB >> 28625765

Flavin-dependent epitranscriptomic world.

Murielle Lombard1, Djemel Hamdane2.   

Abstract

RNAs molecules fulfill key roles in the expression and regulation of the genetic information stored within the DNA chromosomes. In addition to the four canonical bases, U, C, A and G, RNAs harbor various chemically modified derivatives which are generated post-transcriptionally by specific enzymes acting directly at the polymer level. More than one hundred naturally occurring modified nucleosides have been identified to date, the largest number of which is found in tRNAs and rRNA. This remarkable biochemical process produces widely diversified RNAs further expanding the functional repertoires of these nucleic acids. Interestingly, several RNA-modifying enzymes use a flavin bioorganic molecule as a coenzyme in RNA modification pathways. Some of these reactions are simple while others are extremely complex using challenging chemistry orchestrated by large flavoenzymatic systems. In this review, we summarize recent knowledges on the flavin-dependent RNA-modifying enzymes and discuss the relevance of their activity within a cellular context.
Copyright © 2017 Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28625765     DOI: 10.1016/j.abb.2017.06.011

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  7 in total

Review 1.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

Review 2.  The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function.

Authors:  Olivier Finet; Carlo Yague-Sanz; Florian Marchand; Damien Hermand
Journal:  RNA Biol       Date:  2022-01       Impact factor: 4.766

3.  Unveiling structural and functional divergences of bacterial tRNA dihydrouridine synthases: perspectives on the evolution scenario.

Authors:  Charles Bou-Nader; Hugo Montémont; Vincent Guérineau; Olivier Jean-Jean; Damien Brégeon; Djemel Hamdane
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

4.  Time-resolved NMR monitoring of tRNA maturation.

Authors:  Pierre Barraud; Alexandre Gato; Matthias Heiss; Marjorie Catala; Stefanie Kellner; Carine Tisné
Journal:  Nat Commun       Date:  2019-07-29       Impact factor: 14.919

5.  Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.

Authors:  Charles Bou-Nader; Pierre Barraud; Ludovic Pecqueur; Javier Pérez; Christophe Velours; William Shepard; Marc Fontecave; Carine Tisné; Djemel Hamdane
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

6.  An enzymatic activation of formaldehyde for nucleotide methylation.

Authors:  Charles Bou-Nader; Frederick W Stull; Ludovic Pecqueur; Philippe Simon; Vincent Guérineau; Antoine Royant; Marc Fontecave; Murielle Lombard; Bruce A Palfey; Djemel Hamdane
Journal:  Nat Commun       Date:  2021-07-27       Impact factor: 14.919

7.  Pathways of thymidine hypermodification.

Authors:  Yan-Jiun Lee; Nan Dai; Stephanie I Müller; Chudi Guan; Mackenzie J Parker; Morgan E Fraser; Shannon E Walsh; Janani Sridar; Andrew Mulholland; Krutika Nayak; Zhiyi Sun; Yu-Cheng Lin; Donald G Comb; Katherine Marks; Reyaz Gonzalez; Daniel P Dowling; Vahe Bandarian; Lana Saleh; Ivan R Corrêa; Peter R Weigele
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  7 in total

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