Literature DB >> 28625332

Considerations of developing an NGS assay for clinical applications in precision oncology: The NCI-MATCH NGS assay experience.

Chih-Jian Lih1, Naoko Takebe2.   

Abstract

Next generation sequencing (NGS) technologies have been widely adapted in clinical oncology by utilizing the profiled genetic mutation information to select patients and to guide the choice of target therapy. To fulfill the regulatory compliance, development of an NGS assay that will be used in clinical trials requires an analytical validation to meet its intend clinical use. NCI-MATCH trial is the largest precision oncology basket trial which uses a single NGS assay (NCI-MATHC NGS assay) to screen the actionable mutations in 6000 patients, who have relapsed/refractory solid tumors and lymphomas after standard systemic treatment, and assigns matched treatment. This article reviews on the critical considerations during development and validation of NGS assays as an investigational device for genomic based clinical trials and provides the experiences from the development of NCI-MATCH NGS assay.
Copyright © 2017. Published by Elsevier Inc.

Entities:  

Keywords:  Actionable mutations; NCI-MATCH trial; NGS assay development and validation

Mesh:

Year:  2017        PMID: 28625332     DOI: 10.1016/j.currproblcancer.2017.05.003

Source DB:  PubMed          Journal:  Curr Probl Cancer        ISSN: 0147-0272            Impact factor:   3.187


  8 in total

Review 1.  Liquid biopsy and its role in an advanced clinical trial for lung cancer.

Authors:  Donald J Johann; Mathew Steliga; Ik J Shin; Donghoon Yoon; Konstantinos Arnaoutakis; Laura Hutchins; Meeiyueh Liu; Jason Liem; Karl Walker; Andy Pereira; Mary Yang; Susanne K Jeffus; Erich Peterson; Joshua Xu
Journal:  Exp Biol Med (Maywood)       Date:  2018-02

Review 2.  Novel Clinical Trial Designs in Neuro-Oncology.

Authors:  Anurag Saraf; Lorenzo Trippa; Rifaquat Rahman
Journal:  Neurotherapeutics       Date:  2022-08-15       Impact factor: 6.088

3.  Differential Outcomes in Codon 12/13 and Codon 61 NRAS-Mutated Cancers in the Phase II NCI-MATCH Trial of Binimetinib in Patients with NRAS-Mutated Tumors.

Authors:  James M Cleary; Victoria Wang; Rebecca S Heist; E Scott Kopetz; Edith P Mitchell; James A Zwiebel; Kevin S Kapner; Helen X Chen; Shuli Li; Robert J Gray; Lisa M McShane; Larry V Rubinstein; David R Patton; Funda Meric-Bernstam; Melissa S Dillmon; P Mickey Williams; Stanley R Hamilton; Barbara A Conley; Andrew J Aguirre; Peter J O'Dwyer; Lyndsay N Harris; Carlos L Arteaga; Alice P Chen; Keith T Flaherty
Journal:  Clin Cancer Res       Date:  2021-02-26       Impact factor: 12.531

4.  Prognostic implications of a molecular classifier derived from whole-exome sequencing in nasopharyngeal carcinoma.

Authors:  Hai-Yun Wang; Fugen Li; Na Liu; Xiao-Yun Liu; Xin-Hua Yang; Yun-Miao Guo; Jin-Xin Bei; Yi-Xin Zeng; Jian-Yong Shao
Journal:  Cancer Med       Date:  2019-04-05       Impact factor: 4.452

5.  Reporting of master protocols towards a standardized approach: A systematic review.

Authors:  Ellie G Siden; Jay Jh Park; Michael J Zoratti; Louis Dron; Ofir Harari; Kristian Thorlund; Edward J Mills
Journal:  Contemp Clin Trials Commun       Date:  2019-07-04

6.  Use of an Integrated Pan-Cancer Oncology Enrichment Next-Generation Sequencing Assay to Measure Tumour Mutational Burden and Detect Clinically Actionable Variants.

Authors:  Valerie Pestinger; Matthew Smith; Toju Sillo; John M Findlay; Jean-Francois Laes; Gerald Martin; Gary Middleton; Phillipe Taniere; Andrew D Beggs
Journal:  Mol Diagn Ther       Date:  2020-06       Impact factor: 4.074

Review 7.  An overview of precision oncology basket and umbrella trials for clinicians.

Authors:  Jay J H Park; Grace Hsu; Ellie G Siden; Kristian Thorlund; Edward J Mills
Journal:  CA Cancer J Clin       Date:  2020-02-07       Impact factor: 508.702

8.  Variability in biopsy quality informs translational research applications in hepatocellular carcinoma.

Authors:  Kelley Weinfurtner; Joshua Cho; Daniel Ackerman; James X Chen; Abashai Woodard; Wuyan Li; David Ostrowski; Michael C Soulen; Mandeep Dagli; Susan Shamimi-Noori; Jeffrey Mondschein; Deepak Sudheendra; S William Stavropoulos; Shilpa Reddy; Jonas Redmond; Tamim Khaddash; Darshana Jhala; Evan S Siegelman; Emma E Furth; Stephen J Hunt; Gregory J Nadolski; David E Kaplan; Terence P F Gade
Journal:  Sci Rep       Date:  2021-11-23       Impact factor: 4.996

  8 in total

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