Literature DB >> 28624633

From flamingo dance to (desirable) drug discovery: a nature-inspired approach.

Aminael Sánchez-Rodríguez1, Yunierkis Pérez-Castillo2, Stephan C Schürer3, Orazio Nicolotti4, Giuseppe Felice Mangiatordi4, Fernanda Borges5, M Natalia D S Cordeiro6, Eduardo Tejera7, José L Medina-Franco8, Maykel Cruz-Monteagudo9.   

Abstract

The therapeutic effects of drugs are well known to result from their interaction with multiple intracellular targets. Accordingly, the pharma industry is currently moving from a reductionist approach based on a 'one-target fixation' to a holistic multitarget approach. However, many drug discovery practices are still procedural abstractions resulting from the attempt to understand and address the action of biologically active compounds while preventing adverse effects. Here, we discuss how drug discovery can benefit from the principles of evolutionary biology and report two real-life case studies. We do so by focusing on the desirability principle, and its many features and applications, such as machine learning-based multicriteria virtual screening.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28624633      PMCID: PMC5650527          DOI: 10.1016/j.drudis.2017.05.008

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  44 in total

Review 1.  Desirability-based multi-objective QSAR in drug discovery.

Authors:  Maykel Cruz-Monteagudo; M Natalia D S Cordeiro; Eduardo Tejera; Elena Rosa Dominguez; Fernanda Borges
Journal:  Mini Rev Med Chem       Date:  2012-09-01       Impact factor: 3.862

2.  Quantifying, Visualizing, and Monitoring Lead Optimization.

Authors:  Andrew T Maynard; Christopher D Roberts
Journal:  J Med Chem       Date:  2015-08-21       Impact factor: 7.446

3.  The importance of the domain of applicability in QSAR modeling.

Authors:  Shane Weaver; M Paul Gleeson
Journal:  J Mol Graph Model       Date:  2008-01-18       Impact factor: 2.518

Review 4.  Advances in multiparameter optimization methods for de novo drug design.

Authors:  Matthew Segall
Journal:  Expert Opin Drug Discov       Date:  2014-05-03       Impact factor: 6.098

5.  A systematic approach to prioritize drug targets using machine learning, a molecular descriptor-based classification model, and high-throughput screening of plant derived molecules: a case study in oral cancer.

Authors:  Vinay Randhawa; Anil Kumar Singh; Vishal Acharya
Journal:  Mol Biosyst       Date:  2015-12

6.  Discovery of novel antimalarial compounds enabled by QSAR-based virtual screening.

Authors:  Liying Zhang; Denis Fourches; Alexander Sedykh; Hao Zhu; Alexander Golbraikh; Sean Ekins; Julie Clark; Michele C Connelly; Martina Sigal; Dena Hodges; Armand Guiguemde; R Kiplin Guy; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2013-01-23       Impact factor: 4.956

7.  Prioritizing Hits with Appropriate Trade-Offs Between HIV-1 Reverse Transcriptase Inhibitory Efficacy and MT4 Blood Cells Toxicity Through Desirability-Based Multiobjective Optimization and Ranking.

Authors:  Maykel Cruz-Monteagudo; Hai PhamThe; M Natalia D S Cordeiro; Fernanda Borges
Journal:  Mol Inform       Date:  2010-04-14       Impact factor: 3.353

8.  Rationalizing fragment based drug discovery for BACE1: insights from FB-QSAR, FB-QSSR, multi objective (MO-QSPR) and MIF studies.

Authors:  Prabu Manoharan; R S K Vijayan; Nanda Ghoshal
Journal:  J Comput Aided Mol Des       Date:  2010-08-26       Impact factor: 3.686

9.  An integrated approach to ligand- and structure-based drug design: development and application to a series of serine protease inhibitors.

Authors:  Orazio Nicolotti; Teresa Fabiola Miscioscia; Andrea Carotti; Francesco Leonetti; Angelo Carotti
Journal:  J Chem Inf Model       Date:  2008-06-10       Impact factor: 4.956

10.  Sexual display complexity varies non-linearly with age and predicts breeding status in greater flamingos.

Authors:  Charlotte Perrot; Arnaud Béchet; Céline Hanzen; Antoine Arnaud; Roger Pradel; Frank Cézilly
Journal:  Sci Rep       Date:  2016-11-24       Impact factor: 4.379

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  5 in total

1.  A desirability-based multi objective approach for the virtual screening discovery of broad-spectrum anti-gastric cancer agents.

Authors:  Yunierkis Perez-Castillo; Aminael Sánchez-Rodríguez; Eduardo Tejera; Maykel Cruz-Monteagudo; Fernanda Borges; M Natália D S Cordeiro; Huong Le-Thi-Thu; Hai Pham-The
Journal:  PLoS One       Date:  2018-02-08       Impact factor: 3.240

Review 2.  Advances in de Novo Drug Design: From Conventional to Machine Learning Methods.

Authors:  Varnavas D Mouchlis; Antreas Afantitis; Angela Serra; Michele Fratello; Anastasios G Papadiamantis; Vassilis Aidinis; Iseult Lynch; Dario Greco; Georgia Melagraki
Journal:  Int J Mol Sci       Date:  2021-02-07       Impact factor: 5.923

3.  Screening of antibacterial compounds with novel structure from the FDA approved drugs using machine learning methods.

Authors:  Wen-Xing Li; Xin Tong; Peng-Peng Yang; Yang Zheng; Ji-Hao Liang; Gong-Hua Li; Dahai Liu; Dao-Gang Guan; Shao-Xing Dai
Journal:  Aging (Albany NY)       Date:  2022-02-12       Impact factor: 5.682

4.  Machine intelligence-driven framework for optimized hit selection in virtual screening.

Authors:  Neeraj Kumar; Vishal Acharya
Journal:  J Cheminform       Date:  2022-07-22       Impact factor: 8.489

Review 5.  Ayurveda and in silico Approach: A Challenging Proficient Confluence for Better Development of Effective Traditional Medicine Spotlighting Network Pharmacology.

Authors:  Rashmi Sahu; Prashant Kumar Gupta; Amit Mishra; Awanish Kumar
Journal:  Chin J Integr Med       Date:  2022-09-12       Impact factor: 2.626

  5 in total

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