Literature DB >> 28620443

Pattern recognition for predictive, preventive, and personalized medicine in cancer.

Tingting Cheng1,2,3, Xianquan Zhan1,2,3,4.   

Abstract

Predictive, preventive, and personalized medicine (PPPM) is the hot spot and future direction in the field of cancer. Cancer is a complex, whole-body disease that involved multi-factors, multi-processes, and multi-consequences. A series of molecular alterations at different levels of genes (genome), RNAs (transcriptome), proteins (proteome), peptides (peptidome), metabolites (metabolome), and imaging characteristics (radiome) that resulted from exogenous and endogenous carcinogens are involved in tumorigenesis and mutually associate and function in a network system, thus determines the difficulty in the use of a single molecule as biomarker for personalized prediction, prevention, diagnosis, and treatment for cancer. A key molecule-panel is necessary for accurate PPPM practice. Pattern recognition is an effective methodology to discover key molecule-panel for cancer. The modern omics, computation biology, and systems biology technologies lead to the possibility in recognizing really reliable molecular pattern for PPPM practice in cancer. The present article reviewed the pathophysiological basis, methodology, and perspective usages of pattern recognition for PPPM in cancer so that our previous opinion on multi-parameter strategies for PPPM in cancer is translated into real research and development of PPPM or precision medicine (PM) in cancer.

Entities:  

Keywords:  Genomics; Metabolomics; Pattern recognition; Peptidomics; Predictive preventive personalized medicine; Proteomics; Radiomics; Systems biology; Transcriptomics

Year:  2017        PMID: 28620443      PMCID: PMC5471804          DOI: 10.1007/s13167-017-0083-9

Source DB:  PubMed          Journal:  EPMA J        ISSN: 1878-5077            Impact factor:   6.543


  86 in total

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2.  Sparse representation and Bayesian detection of genome copy number alterations from microarray data.

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3.  Multivariate hypergeometric similarity measure.

Authors:  Chanchala D Kaddi; R Mitchell Parry; May D Wang
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4.  Systemic miRNA-195 differentiates breast cancer from other malignancies and is a potential biomarker for detecting noninvasive and early stage disease.

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5.  Chemo-informatic strategy for imaging mass spectrometry-based hyperspectral profiling of lipid signatures in colorectal cancer.

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Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-07       Impact factor: 11.205

Review 6.  Diagnostic applications of cell-free and circulating tumor cell-associated miRNAs in cancer patients.

Authors:  Bianca Mostert; Anieta M Sieuwerts; John W M Martens; Stefan Sleijfer
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7.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

Review 8.  CRAC channels, calcium, and cancer in light of the driver and passenger concept.

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9.  Soluble normal and mutated DNA sequences from single-copy genes in human blood.

Authors:  G D Sorenson; D M Pribish; F H Valone; V A Memoli; D J Bzik; S L Yao
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  1994 Jan-Feb       Impact factor: 4.254

10.  Feature selection in the reconstruction of complex network representations of spectral data.

Authors:  Massimiliano Zanin; Ernestina Menasalvas; Stefano Boccaletti; Pedro Sousa
Journal:  PLoS One       Date:  2013-08-26       Impact factor: 3.240

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  42 in total

1.  Metabolomics technology and bioinformatics for precision medicine.

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Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

2.  Blood biomarker panel recommended for personalized prediction, prognosis, and prevention of complications associated with abdominal aortic aneurysm.

Authors:  Jiri Molacek; Vladislav Treska; Jan Zeithaml; Ivana Hollan; Ondrej Topolcan; Ladislav Pecen; David Slouka; Marie Karlikova; Radek Kucera
Journal:  EPMA J       Date:  2019-06-03       Impact factor: 6.543

3.  Integration of quantitative phosphoproteomics and transcriptomics revealed phosphorylation-mediated molecular events as useful tools for a potential patient stratification and personalized treatment of human nonfunctional pituitary adenomas.

Authors:  Dan Liu; Jiajia Li; Na Li; Miaolong Lu; Siqi Wen; Xianquan Zhan
Journal:  EPMA J       Date:  2020-08-13       Impact factor: 6.543

4.  Identification of pathology-specific regulators of m6A RNA modification to optimize lung cancer management in the context of predictive, preventive, and personalized medicine.

Authors:  Na Li; Xianquan Zhan
Journal:  EPMA J       Date:  2020-07-29       Impact factor: 6.543

5.  Urinary Exosomal MicroRNAs as Potential Non-invasive Biomarkers in Breast Cancer Detection.

Authors:  Marc Hirschfeld; Gerta Rücker; Daniela Weiß; Kai Berner; Andrea Ritter; Markus Jäger; Thalia Erbes
Journal:  Mol Diagn Ther       Date:  2020-04       Impact factor: 4.074

Review 6.  Colorectal cancer in Saudi Arabia as the proof-of-principle model for implementing strategies of predictive, preventive, and personalized medicine in healthcare.

Authors:  Mesnad Alyabsi; Abdulrahman Alhumaid; Haafiz Allah-Bakhsh; Mohammed Alkelya; Mohammad Azhar Aziz
Journal:  EPMA J       Date:  2019-08-31       Impact factor: 6.543

7.  Association among resistin, adenylate cyclase-associated protein 1 and high-density lipoprotein cholesterol in patients with colorectal cancer: a multi-marker approach, as a hallmark of innovative predictive, preventive, and personalized medicine.

Authors:  Marija Mihajlovic; Ana Ninic; Miron Sopic; Milica Miljkovic; Aleksandra Stefanovic; Jelena Vekic; Vesna Spasojevic-Kalimanovska; Dejan Zeljkovic; Bratislav Trifunovic; Zeljka Stjepanovic; Aleksandra Zeljkovic
Journal:  EPMA J       Date:  2019-07-20       Impact factor: 6.543

8.  Comparisons between protocols and publications of case-control studies: analysis of potential causes of non-reproducibility and recommendations for enhancing the quality of personalization in healthcare.

Authors:  Haifeng Hou; Guoyong Ding; Xuan Zhao; Zixiu Meng; Jiangmin Xu; Zheng Guo; Yulu Zheng; Dong Li; Wei Wang
Journal:  EPMA J       Date:  2019-03-19       Impact factor: 6.543

9.  The burden of prostate cancer is associated with human development index: evidence from 87 countries, 1990-2016.

Authors:  Rajesh Sharma
Journal:  EPMA J       Date:  2019-05-08       Impact factor: 6.543

10.  Radiomics improves efficiency for differentiating subclinical pheochromocytoma from lipid-poor adenoma: a predictive, preventive and personalized medical approach in adrenal incidentalomas.

Authors:  Xiaoping Yi; Xiao Guan; Youming Zhang; Longfei Liu; Xueying Long; Hongling Yin; Zhongjie Wang; Xuejun Li; Weihua Liao; Bihong T Chen; Chishing Zee
Journal:  EPMA J       Date:  2018-09-21       Impact factor: 6.543

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