Literature DB >> 28615220

Confounding in ex vivo models of Diamond-Blackfan anemia.

Jacob C Ulirsch1,2,3, Caleb Lareau3,4, Leif S Ludwig1,2,3, Narla Mohandas5, David G Nathan1,2, Vijay G Sankaran1,2,3.   

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Year:  2017        PMID： 28615220      PMCID： PMC5580274          DOI： 10.1182/blood-2017-05-783191

Source DB:  PubMed          Journal:  Blood        ISSN： 0006-4971            Impact factor:   22.113


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  22 in total

1.  The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Authors:  Jeffrey T Leek; W Evan Johnson; Hilary S Parker; Andrew E Jaffe; John D Storey
Journal:  Bioinformatics       Date:  2012-01-17       Impact factor: 6.937

2.  Delayed globin synthesis leads to excess heme and the macrocytic anemia of Diamond Blackfan anemia and del(5q) myelodysplastic syndrome.

Authors:  Zhantao Yang; Siobán B Keel; Akiko Shimamura; Li Liu; Aaron T Gerds; Henry Y Li; Brent L Wood; Bart L Scott; Janis L Abkowitz
Journal:  Sci Transl Med       Date:  2016-05-11       Impact factor: 17.956

Review 3.  Computational and analytical challenges in single-cell transcriptomics.

Authors:  Oliver Stegle; Sarah A Teichmann; John C Marioni
Journal:  Nat Rev Genet       Date:  2015-01-28       Impact factor: 53.242

4.  Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia.

Authors:  Vijay G Sankaran; Roxanne Ghazvinian; Ron Do; Prathapan Thiru; Jo-Anne Vergilio; Alan H Beggs; Colin A Sieff; Stuart H Orkin; David G Nathan; Eric S Lander; Hanna T Gazda
Journal:  J Clin Invest       Date:  2012-06-18       Impact factor: 14.808

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

6.  Defective ribosomal protein gene expression alters transcription, translation, apoptosis, and oncogenic pathways in Diamond-Blackfan anemia.

Authors:  Hanna T Gazda; Alvin T Kho; Despina Sanoudou; Jan M Zaucha; Isaac S Kohane; Colin A Sieff; Alan H Beggs
Journal:  Stem Cells       Date:  2006-06-01       Impact factor: 6.277

7.  Global gene expression analysis of human erythroid progenitors.

Authors:  Alison T Merryweather-Clarke; Ann Atzberger; Shamit Soneji; Nicki Gray; Kevin Clark; Craig Waugh; Simon J McGowan; Stephen Taylor; Asoke K Nandi; William G Wood; David J Roberts; Douglas R Higgs; Veronica J Buckle; Kathryn J H Robson
Journal:  Blood       Date:  2011-01-26       Impact factor: 22.113

8.  Altered translation of GATA1 in Diamond-Blackfan anemia.

Authors:  Leif S Ludwig; Hanna T Gazda; Jennifer C Eng; Stephen W Eichhorn; Prathapan Thiru; Roxanne Ghazvinian; Tracy I George; Jason R Gotlib; Alan H Beggs; Colin A Sieff; Harvey F Lodish; Eric S Lander; Vijay G Sankaran
Journal:  Nat Med       Date:  2014-06-22       Impact factor: 53.440

9.  Heterogeneity in white blood cells has potential to confound DNA methylation measurements.

Authors:  Bjorn T Adalsteinsson; Haukur Gudnason; Thor Aspelund; Tamara B Harris; Lenore J Launer; Gudny Eiriksdottir; Albert V Smith; Vilmundur Gudnason
Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240

10.  Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution.

Authors:  M Ryan Corces; Jason D Buenrostro; Beijing Wu; Peyton G Greenside; Steven M Chan; Julie L Koenig; Michael P Snyder; Jonathan K Pritchard; Anshul Kundaje; William J Greenleaf; Ravindra Majeti; Howard Y Chang
Journal:  Nat Genet       Date:  2016-08-15       Impact factor: 38.330
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  8 in total

1.  The Genetic Landscape of Diamond-Blackfan Anemia.

Authors:  Jacob C Ulirsch; Jeffrey M Verboon; Shideh Kazerounian; Michael H Guo; Daniel Yuan; Leif S Ludwig; Robert E Handsaker; Nour J Abdulhay; Claudia Fiorini; Giulio Genovese; Elaine T Lim; Aaron Cheng; Beryl B Cummings; Katherine R Chao; Alan H Beggs; Casie A Genetti; Colin A Sieff; Peter E Newburger; Edyta Niewiadomska; Michal Matysiak; Adrianna Vlachos; Jeffrey M Lipton; Eva Atsidaftos; Bertil Glader; Anupama Narla; Pierre-Emmanuel Gleizes; Marie-Françoise O'Donohue; Nathalie Montel-Lehry; David J Amor; Steven A McCarroll; Anne H O'Donnell-Luria; Namrata Gupta; Stacey B Gabriel; Daniel G MacArthur; Eric S Lander; Monkol Lek; Lydie Da Costa; David G Nathan; Andrei A Korostelev; Ron Do; Vijay G Sankaran; Hanna T Gazda
Journal:  Am J Hum Genet       Date:  2018-11-29       Impact factor: 11.025

2.  Response: Making "perfect" the enemy of good.

Authors:  Jason E Farrar; Donna Neuberg; Timothy Triche; David M Bodine
Journal:  Blood       Date:  2017-07-28       Impact factor: 22.113

Review 3.  Concise Review: Advanced Cell Culture Models for Diamond Blackfan Anemia and Other Erythroid Disorders.

Authors:  Anna Rita Migliaccio; Lilian Varricchio
Journal:  Stem Cells       Date:  2017-12-05       Impact factor: 6.277

4.  Regulation of globin-heme balance in Diamond-Blackfan anemia by HSP70/GATA1.

Authors:  Sarah Rio; Marc Gastou; Narjesse Karboul; Raphaёl Derman; Thunwarat Suriyun; Hana Manceau; Thierry Leblanc; Jamel El Benna; Caroline Schmitt; Slim Azouzi; Jérome Larghéro; Zoubida Karim; Alejandra Macias-Garcia; Jane-Jane Chen; Olivier Hermine; Geneviève Courtois; Hervé Puy; Laurent Gouya; Narla Mohandas; Lydie Da Costa
Journal:  Blood       Date:  2019-01-30       Impact factor: 22.113

Review 5.  Perspective on Diamond-Blackfan anemia: lessons from a rare congenital bone marrow failure syndrome.

Authors:  K M Sakamoto; A Narla
Journal:  Leukemia       Date:  2017-09-08       Impact factor: 11.528

6.  Genetic disarray follows mutant KLF1-E325K expression in a congenital dyserythropoietic anemia patient.

Authors:  Lilian Varricchio; Antanas Planutis; Deepa Manwani; Julie Jaffray; W Beau Mitchell; Anna Rita Migliaccio; James J Bieker
Journal:  Haematologica       Date:  2019-03-14       Impact factor: 9.941

Review 7.  The Interplay between Drivers of Erythropoiesis and Iron Homeostasis in Rare Hereditary Anemias: Tipping the Balance.

Authors:  Simon Grootendorst; Jonathan de Wilde; Birgit van Dooijeweert; Annelies van Vuren; Wouter van Solinge; Roger Schutgens; Richard van Wijk; Marije Bartels
Journal:  Int J Mol Sci       Date:  2021-02-23       Impact factor: 5.923

8.  Recapitulation of erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I) identifies defects in differentiation and nucleolar abnormalities.

Authors:  Caroline Scott; Damien J Downes; Jill M Brown; Robert Beagrie; Aude-Anais Olijnik; Matthew Gosden; Ron Schwessinger; Christopher A Fisher; Anna Rose; David J P Ferguson; Errin Johnson; Quentin A Hill; Steven Okoli; Raffaele Renella; Kate Ryan; Marjorie Brand; Jim Hughes; Noemi B A Roy; Douglas R Higgs; Christian Babbs; Veronica J Buckle
Journal:  Haematologica       Date:  2021-11-01       Impact factor: 9.941
  8 in total

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