Literature DB >> 28609697

Beyond proteome diversity: alternative splicing as a regulator of neuronal transcript dynamics.

Oriane Mauger1, Peter Scheiffele2.   

Abstract

Brain development and function are governed by tightly controlled gene expression programs. Transcriptional repertoires in neurons are highly specific to developmental stage, neuronal cell type and can undergo rapid changes upon neuronal stimulation. Dedicated molecular mechanisms are required to achieve such fine-tuned regulation. In addition to transcriptional programs, post-transcriptional processes and notably alternative splicing substantially contribute to the elaboration of neuronal gene expression. While alternative splicing has been viewed primarily as a means for expanding proteome diversity, it emerges to also be a major regulator of transcript levels and dynamics. In this review we will describe some of the principal alternative splicing-linked mechanisms that control neuronal transcriptomes and discuss their implications for the central nervous system.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28609697      PMCID: PMC6689270          DOI: 10.1016/j.conb.2017.05.012

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  51 in total

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Authors:  Corinna Giorgi; Gene W Yeo; Martha E Stone; Donald B Katz; Christopher Burge; Gina Turrigiano; Melissa J Moore
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

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6.  Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability.

Authors:  S M Medghalchi; P A Frischmeyer; J T Mendell; A G Kelly; A M Lawler; H C Dietz
Journal:  Hum Mol Genet       Date:  2001-01-15       Impact factor: 6.150

7.  AU binding proteins recruit the exosome to degrade ARE-containing mRNAs.

Authors:  C Y Chen; R Gherzi; S E Ong; E L Chan; R Raijmakers; G J Pruijn; G Stoecklin; C Moroni; M Mann; M Karin
Journal:  Cell       Date:  2001-11-16       Impact factor: 41.582

8.  Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.

Authors:  Joshua T Mendell; Neda A Sharifi; Jennifer L Meyers; Francisco Martinez-Murillo; Harry C Dietz
Journal:  Nat Genet       Date:  2004-09-26       Impact factor: 38.330

9.  Rapid, transcript-specific changes in splicing in response to environmental stress.

Authors:  Jeffrey A Pleiss; Gregg B Whitworth; Megan Bergkessel; Christine Guthrie
Journal:  Mol Cell       Date:  2007-09-21       Impact factor: 17.970

10.  NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements.

Authors:  Joachim Weischenfeldt; Inge Damgaard; David Bryder; Kim Theilgaard-Mönch; Lina A Thoren; Finn Cilius Nielsen; Sten Eirik W Jacobsen; Claus Nerlov; Bo Torben Porse
Journal:  Genes Dev       Date:  2008-05-15       Impact factor: 11.361

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  7 in total

1.  A Sam68-dependent alternative splicing program shapes postsynaptic protein complexes.

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2.  FACS-Based Neuronal Cell Type-Specific RNA Isolation and Alternative Splicing Analysis.

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Journal:  Methods Mol Biol       Date:  2022

Review 3.  Untangle the Multi-Facet Functions of Auts2 as an Entry Point to Understand Neurodevelopmental Disorders.

Authors:  Wenbin Pang; Xinan Yi; Ling Li; Liyan Liu; Wei Xiang; Le Xiao
Journal:  Front Psychiatry       Date:  2021-04-23       Impact factor: 4.157

Review 4.  Getting the Entire Message: Progress in Isoform Sequencing.

Authors:  Simon A Hardwick; Anoushka Joglekar; Paul Flicek; Adam Frankish; Hagen U Tilgner
Journal:  Front Genet       Date:  2019-08-16       Impact factor: 4.599

5.  Emerging Roles of Activity-Dependent Alternative Splicing in Homeostatic Plasticity.

Authors:  Agnes Thalhammer; Fanny Jaudon; Lorenzo A Cingolani
Journal:  Front Cell Neurosci       Date:  2020-05-12       Impact factor: 5.505

6.  ELAV/Hu RNA binding proteins determine multiple programs of neural alternative splicing.

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Journal:  PLoS Genet       Date:  2021-04-07       Impact factor: 5.917

7.  A Deep Exon Cryptic Splice Site Promotes Aberrant Intron Retention in a Von Willebrand Disease Patient.

Authors:  John G Conboy
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  7 in total

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