Literature DB >> 28599385

Big Data, Small Sample.

Inna Gerlovina, Mark J van der Laan, Alan Hubbard.   

Abstract

Multiple comparisons and small sample size, common characteristics of many types of "Big Data" including those that are produced by genomic studies, present specific challenges that affect reliability of inference. Use of multiple testing procedures necessitates calculation of very small tail probabilities of a test statistic distribution. Results based on large deviation theory provide a formal condition that is necessary to guarantee error rate control given practical sample sizes, linking the number of tests and the sample size; this condition, however, is rarely satisfied. Using methods that are based on Edgeworth expansions (relying especially on the work of Peter Hall), we explore the impact of departures of sampling distributions from typical assumptions on actual error rates. Our investigation illustrates how far the actual error rates can be from the declared nominal levels, suggesting potentially wide-spread problems with error rate control, specifically excessive false positives. This is an important factor that contributes to "reproducibility crisis". We also review some other commonly used methods (such as permutation and methods based on finite sampling inequalities) in their application to multiple testing/small sample data. We point out that Edgeworth expansions, providing higher order approximations to the sampling distribution, offer a promising direction for data analysis that could improve reliability of studies relying on large numbers of comparisons with modest sample sizes.

Keywords:  finite sample inference; hypothesis testing; multiple comparisons

Mesh:

Year:  2017        PMID: 28599385     DOI: 10.1515/ijb-2017-0012

Source DB:  PubMed          Journal:  Int J Biostat        ISSN: 1557-4679            Impact factor:   0.968


  1 in total

1.  False and true positives in arthropod thermal adaptation candidate gene lists.

Authors:  Maike Herrmann; Lev Y Yampolsky
Journal:  Genetica       Date:  2021-05-07       Impact factor: 1.082

  1 in total

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