Literature DB >> 28596996

Global variation in gene expression and the value of diverse sampling.

Derek E Kelly1,2, Matthew E B Hansen1, Sarah A Tishkoff1,2,3.   

Abstract

The genomics era has accelerated our understanding of how genetic and epigenetic factors influence both normal variable traits and disease risk in humans. However, the majority of "omics" studies have focused on individuals living in urban centers, primarily from Europe and Asia, neglecting much of the genetic and environmental variation that exists across worldwide populations. Comparative studies of gene regulation in ethnically diverse populations are informing our understanding of how evolutionary forces have shaped the genetic and molecular mechanisms underlying complex traits, and studying gene expression in different environmental contexts is enabling the dissection of disease-related pathways such as immune response. Such approaches are vital to the equitable application of genomics and medicine.

Entities:  

Year:  2017        PMID: 28596996      PMCID: PMC5458633          DOI: 10.1016/j.coisb.2016.12.018

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  57 in total

1.  Genetic structure of human populations.

Authors:  Noah A Rosenberg; Jonathan K Pritchard; James L Weber; Howard M Cann; Kenneth K Kidd; Lev A Zhivotovsky; Marcus W Feldman
Journal:  Science       Date:  2002-12-20       Impact factor: 47.728

2.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

3.  Common genetic variants account for differences in gene expression among ethnic groups.

Authors:  Richard S Spielman; Laurel A Bastone; Joshua T Burdick; Michael Morley; Warren J Ewens; Vivian G Cheung
Journal:  Nat Genet       Date:  2007-01-07       Impact factor: 38.330

4.  Gene-expression variation within and among human populations.

Authors:  John D Storey; Jennifer Madeoy; Jeanna L Strout; Mark Wurfel; James Ronald; Joshua M Akey
Journal:  Am J Hum Genet       Date:  2007-01-11       Impact factor: 11.025

5.  On the design and analysis of gene expression studies in human populations.

Authors:  Joshua M Akey; Shameek Biswas; Jeffrey T Leek; John D Storey
Journal:  Nat Genet       Date:  2007-07       Impact factor: 38.330

6.  Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.

Authors:  Jun Zhu; Bin Zhang; Erin N Smith; Becky Drees; Rachel B Brem; Leonid Kruglyak; Roger E Bumgarner; Eric E Schadt
Journal:  Nat Genet       Date:  2008-06-15       Impact factor: 38.330

7.  Convergent adaptation of human lactase persistence in Africa and Europe.

Authors:  Sarah A Tishkoff; Floyd A Reed; Alessia Ranciaro; Benjamin F Voight; Courtney C Babbitt; Jesse S Silverman; Kweli Powell; Holly M Mortensen; Jibril B Hirbo; Maha Osman; Muntaser Ibrahim; Sabah A Omar; Godfrey Lema; Thomas B Nyambo; Jilur Ghori; Suzannah Bumpstead; Jonathan K Pritchard; Gregory A Wray; Panos Deloukas
Journal:  Nat Genet       Date:  2006-12-10       Impact factor: 38.330

8.  Relative impact of nucleotide and copy number variation on gene expression phenotypes.

Authors:  Barbara E Stranger; Matthew S Forrest; Mark Dunning; Catherine E Ingle; Claude Beazley; Natalie Thorne; Richard Redon; Christine P Bird; Anna de Grassi; Charles Lee; Chris Tyler-Smith; Nigel Carter; Stephen W Scherer; Simon Tavaré; Panagiotis Deloukas; Matthew E Hurles; Emmanouil T Dermitzakis
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

9.  The genetic structure and history of Africans and African Americans.

Authors:  Sarah A Tishkoff; Floyd A Reed; Françoise R Friedlaender; Christopher Ehret; Alessia Ranciaro; Alain Froment; Jibril B Hirbo; Agnes A Awomoyi; Jean-Marie Bodo; Ogobara Doumbo; Muntaser Ibrahim; Abdalla T Juma; Maritha J Kotze; Godfrey Lema; Jason H Moore; Holly Mortensen; Thomas B Nyambo; Sabah A Omar; Kweli Powell; Gideon S Pretorius; Michael W Smith; Mahamadou A Thera; Charles Wambebe; James L Weber; Scott M Williams
Journal:  Science       Date:  2009-04-30       Impact factor: 47.728

10.  Independent introduction of two lactase-persistence alleles into human populations reflects different history of adaptation to milk culture.

Authors:  Nabil Sabri Enattah; Tine G K Jensen; Mette Nielsen; Rikke Lewinski; Mikko Kuokkanen; Heli Rasinpera; Hatem El-Shanti; Jeong Kee Seo; Michael Alifrangis; Insaf F Khalil; Abdrazak Natah; Ahmed Ali; Sirajedin Natah; David Comas; S Qasim Mehdi; Leif Groop; Else Marie Vestergaard; Faiqa Imtiaz; Mohamed S Rashed; Brian Meyer; Jesper Troelsen; Leena Peltonen
Journal:  Am J Hum Genet       Date:  2008-01       Impact factor: 11.025

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  9 in total

1.  PopCluster: an algorithm to identify genetic variants with ethnicity-dependent effects.

Authors:  Anastasia Gurinovich; Harold Bae; John J Farrell; Stacy L Andersen; Stefano Monti; Annibale Puca; Gil Atzmon; Nir Barzilai; Thomas T Perls; Paola Sebastiani
Journal:  Bioinformatics       Date:  2019-09-01       Impact factor: 6.937

2.  Genetic Architecture of Gene Expression in European and African Americans: An eQTL Mapping Study in GENOA.

Authors:  Lulu Shang; Jennifer A Smith; Wei Zhao; Minjung Kho; Stephen T Turner; Thomas H Mosley; Sharon L R Kardia; Xiang Zhou
Journal:  Am J Hum Genet       Date:  2020-03-26       Impact factor: 11.025

3.  Inferred divergent gene regulation in archaic hominins reveals potential phenotypic differences.

Authors:  Laura L Colbran; Eric R Gamazon; Dan Zhou; Patrick Evans; Nancy J Cox; John A Capra
Journal:  Nat Ecol Evol       Date:  2019-10-07       Impact factor: 15.460

Review 4.  Advances in integrative African genomics.

Authors:  Chao Zhang; Matthew E B Hansen; Sarah A Tishkoff
Journal:  Trends Genet       Date:  2021-11-02       Impact factor: 11.639

5.  Bayesian Framework for Detecting Gene Expression Outliers in Individual Samples.

Authors:  John Vivian; Jordan M Eizenga; Holly C Beale; Olena M Vaske; Benedict Paten
Journal:  JCO Clin Cancer Inform       Date:  2020-02

6.  Genetic architecture of gene expression traits across diverse populations.

Authors:  Lauren S Mogil; Angela Andaleon; Alexa Badalamenti; Scott P Dickinson; Xiuqing Guo; Jerome I Rotter; W Craig Johnson; Hae Kyung Im; Yongmei Liu; Heather E Wheeler
Journal:  PLoS Genet       Date:  2018-08-10       Impact factor: 5.917

Review 7.  Sequence and Evolutionary Features for the Alternatively Spliced Exons of Eukaryotic Genes.

Authors:  Shi-Yi Chen; Cao Li; Xianbo Jia; Song-Jia Lai
Journal:  Int J Mol Sci       Date:  2019-08-06       Impact factor: 5.923

Review 8.  Transcriptome variation in human populations and its potential application in forensics.

Authors:  P Daca-Roszak; E Zietkiewicz
Journal:  J Appl Genet       Date:  2019-08-10       Impact factor: 3.240

Review 9.  The influence of evolutionary history on human health and disease.

Authors:  Mary Lauren Benton; Abin Abraham; Abigail L LaBella; Patrick Abbot; Antonis Rokas; John A Capra
Journal:  Nat Rev Genet       Date:  2021-01-06       Impact factor: 53.242

  9 in total

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