Literature DB >> 28593814

Expanding Axonal Transcriptome Brings New Functions for Axonally Synthesized Proteins in Health and Disease.

Amar N Kar1, Seung Joon Lee1, Jeffery L Twiss1,2.   

Abstract

Intra-axonal protein synthesis has been shown to play critical roles in both development and repair of axons. Axons provide long-range connectivity in the nervous system, and disruption of their function and/or structure is seen in several neurological diseases and disorders. Axonally synthesized proteins or losses in axonally synthesized proteins contribute to neurodegenerative diseases, neuropathic pain, viral transport, and survival of axons. Increasing sensitivity of RNA detection and quantitation coupled with methods to isolate axons to purity has shown that a surprisingly complex transcriptome exists in axons. This extends across different species, neuronal populations, and physiological conditions. These studies have helped define the repertoire of neuronal mRNAs that can localize into axons and imply previously unrecognized functions for local translation in neurons. Here, we review the current state of transcriptomics studies of isolated axons, contrast axonal mRNA profiles between different neuronal types and growth states, and discuss how mRNA transport into and translation within axons contribute to neurological disorders.

Entities:  

Keywords:  RNA binding protein; axon; mRNA transport; ribonucleoprotein particle; translation

Mesh:

Substances:

Year:  2017        PMID: 28593814      PMCID: PMC5985154          DOI: 10.1177/1073858417712668

Source DB:  PubMed          Journal:  Neuroscientist        ISSN: 1073-8584            Impact factor:   7.519


  172 in total

1.  Identification of a cis-acting element that localizes mRNA to synapses.

Authors:  Elliott J Meer; Dan Ohtan Wang; Sangmok Kim; Ian Barr; Feng Guo; Kelsey C Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-01       Impact factor: 11.205

2.  Limited availability of ZBP1 restricts axonal mRNA localization and nerve regeneration capacity.

Authors:  Christopher J Donnelly; Dianna E Willis; Mei Xu; Chhavy Tep; Chunsu Jiang; Soonmoon Yoo; N Carolyn Schanen; Catherine B Kirn-Safran; Jan van Minnen; Arthur English; Sung Ok Yoon; Gary J Bassell; Jeffery L Twiss
Journal:  EMBO J       Date:  2011-09-30       Impact factor: 11.598

3.  A microfluidic culture platform for CNS axonal injury, regeneration and transport.

Authors:  Anne M Taylor; Mathew Blurton-Jones; Seog Woo Rhee; David H Cribbs; Carl W Cotman; Noo Li Jeon
Journal:  Nat Methods       Date:  2005-08       Impact factor: 28.547

4.  Survival motor neuron function in motor axons is independent of functions required for small nuclear ribonucleoprotein biogenesis.

Authors:  Tessa L Carrel; Michelle L McWhorter; Eileen Workman; Honglai Zhang; Elizabeth C Wolstencroft; Christian Lorson; Gary J Bassell; Arthur H M Burghes; Christine E Beattie
Journal:  J Neurosci       Date:  2006-10-25       Impact factor: 6.167

5.  The survival of motor neuron (SMN) protein interacts with the mRNA-binding protein HuD and regulates localization of poly(A) mRNA in primary motor neuron axons.

Authors:  Claudia Fallini; Honglai Zhang; Yuehang Su; Vincenzo Silani; Robert H Singer; Wilfried Rossoll; Gary J Bassell
Journal:  J Neurosci       Date:  2011-03-09       Impact factor: 6.167

6.  RhoA/ROCK1 signaling regulates stress granule formation and apoptosis.

Authors:  Nien-Pei Tsai; Li-Na Wei
Journal:  Cell Signal       Date:  2009-12-11       Impact factor: 4.315

7.  Subcellular profiling reveals distinct and developmentally regulated repertoire of growth cone mRNAs.

Authors:  Krishna H Zivraj; Yi Chun Loraine Tung; Michael Piper; Laura Gumy; James W Fawcett; Giles S H Yeo; Christine E Holt
Journal:  J Neurosci       Date:  2010-11-17       Impact factor: 6.167

8.  Genome-wide identification of mRNAs associated with the protein SMN whose depletion decreases their axonal localization.

Authors:  Florence Rage; Nawal Boulisfane; Khalil Rihan; Henry Neel; Thierry Gostan; Edouard Bertrand; Rémy Bordonné; Johann Soret
Journal:  RNA       Date:  2013-10-23       Impact factor: 4.942

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

10.  Growth cone MKK7 mRNA targeting regulates MAP1b-dependent microtubule bundling to control neurite elongation.

Authors:  Daniel Feltrin; Ludovico Fusco; Harald Witte; Francesca Moretti; Katrin Martin; Michel Letzelter; Erika Fluri; Peter Scheiffele; Olivier Pertz
Journal:  PLoS Biol       Date:  2012-12-04       Impact factor: 8.029

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  14 in total

Review 1.  Axonal mRNA transport and translation at a glance.

Authors:  Pabitra K Sahoo; Deanna S Smith; Nora Perrone-Bizzozero; Jeffery L Twiss
Journal:  J Cell Sci       Date:  2018-04-13       Impact factor: 5.285

Review 2.  Intra-axonal mechanisms driving axon regeneration.

Authors:  Terika P Smith; Pabitra K Sahoo; Amar N Kar; Jeffery L Twiss
Journal:  Brain Res       Date:  2020-04-28       Impact factor: 3.252

Review 3.  The functional organization of axonal mRNA transport and translation.

Authors:  Irene Dalla Costa; Courtney N Buchanan; Matthew D Zdradzinski; Pabitra K Sahoo; Terika P Smith; Elizabeth Thames; Amar N Kar; Jeffery L Twiss
Journal:  Nat Rev Neurosci       Date:  2020-12-07       Impact factor: 34.870

Review 4.  mRNP assembly, axonal transport, and local translation in neurodegenerative diseases.

Authors:  Bilal Khalil; Dmytro Morderer; Phillip L Price; Feilin Liu; Wilfried Rossoll
Journal:  Brain Res       Date:  2018-02-17       Impact factor: 3.252

Review 5.  Protein Translation and Psychiatric Disorders.

Authors:  Sophie Laguesse; Dorit Ron
Journal:  Neuroscientist       Date:  2019-07-04       Impact factor: 7.519

6.  Quantitative BONCAT Allows Identification of Newly Synthesized Proteins after Optic Nerve Injury.

Authors:  Sahil H Shah; Lucio M Schiapparelli; Satoshi Yokota; Yuanhui Ma; Xin Xia; Sahana Shankar; Sarah Saturday; Michael Nahmou; Catalina Sun; John Yates; Hollis T Cline; Jeffrey L Goldberg
Journal:  J Neurosci       Date:  2022-04-08       Impact factor: 6.167

Review 7.  Translational Control Mechanisms in Persistent Pain.

Authors:  Arkady Khoutorsky; Theodore J Price
Journal:  Trends Neurosci       Date:  2018-02       Impact factor: 13.837

8.  A Ca2+-Dependent Switch Activates Axonal Casein Kinase 2α Translation and Drives G3BP1 Granule Disassembly for Axon Regeneration.

Authors:  Pabitra K Sahoo; Amar N Kar; Nitzan Samra; Marco Terenzio; Priyanka Patel; Seung Joon Lee; Sharmina Miller; Elizabeth Thames; Blake Jones; Riki Kawaguchi; Giovanni Coppola; Mike Fainzilber; Jeffery L Twiss
Journal:  Curr Biol       Date:  2020-10-15       Impact factor: 10.834

Review 9.  Long-distance regressive signaling in neural development and disease.

Authors:  Amrita Pathak; Shayla Clark; Francisca C Bronfman; Christopher D Deppmann; Bruce D Carter
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-05-11       Impact factor: 5.814

Review 10.  Functional Genomics of Axons and Synapses to Understand Neurodegenerative Diseases.

Authors:  Andres Di Paolo; Joaquin Garat; Guillermo Eastman; Joaquina Farias; Federico Dajas-Bailador; Pablo Smircich; José Roberto Sotelo-Silveira
Journal:  Front Cell Neurosci       Date:  2021-06-25       Impact factor: 5.505

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