Literature DB >> 28581925

An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira.

Rich Boden1,2, Kathleen M Scott3, John Williams3, Sydney Russel3, Kirsten Antonen3, Alex W Rae2, Lee P Hutt1,2.   

Abstract

Thiomicrospira(Tms) species are small sulfur-oxidizing chemolithoautotrophic members of the Gammaproteobacteria. Whilst the type species Tms. pelophila and closely related Tms. thyasirae exhibit canonical spiral morphology under sub-optimal growth conditions, most species are vibrios or rods. The 16S rRNA gene diversity is vast, with identities as low as 91.6 % for Tms. pelophila versus Tms. frisia, for example. Thiomicrospira was examined with closely related genera Hydrogenovibrio and Thioalkalimicrobium and, to rationalize organisms on the basis of the 16S rRNA gene phylogeny, physiology and morphology, we reclassify Tms. kuenenii, Tms. crunogena, Tms. thermophila and Tms. halophila to Hydrogenovibrio kuenenii comb. nov., H. crunogenus corrig. comb. nov., H. thermophilus corrig. comb. nov. and H. halophilus corrig. comb. nov. We reclassify Tms. frisia, Tms. arctica, Tms. psychrophila and Tms. chilensis to Thiomicrorhabdus (Tmr) gen. nov., as Tmr. frisia comb. nov., Tmr. arctica comb. nov., Tmr. psychrophila comb. nov. and Tmr. chilensis comb. nov. - the type species of Thiomicrorhabdus is Tmr. frisia. We demonstrate that Thioalkalimicrobium species fall within the genus Thiomicrospira sensu stricto, thus reclassifying them as Tms. aerophila corrig. comb. nov., Tms. microaerophila corrig. comb. nov., Tms. cyclica corrig. comb. nov. and Tms. sibirica corrig. comb. nov. We provide emended descriptions of the genera Thiomicrospira and Hydrogenovibrio and of Tms. thyasirae.

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Year:  2017        PMID: 28581925     DOI: 10.1099/ijsem.0.001855

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  15 in total

1.  In situ electrosynthetic bacterial growth using electricity generated by a deep-sea hydrothermal vent.

Authors:  Masahiro Yamamoto; Yoshihiro Takaki; Hiroyuki Kashima; Miwako Tsuda; Akiko Tanizaki; Ryuhei Nakamura; Ken Takai
Journal:  ISME J       Date:  2022-09-23       Impact factor: 11.217

2.  Diversity in CO2-Concentrating Mechanisms among Chemolithoautotrophs from the Genera Hydrogenovibrio, Thiomicrorhabdus, and Thiomicrospira, Ubiquitous in Sulfidic Habitats Worldwide.

Authors:  Kathleen M Scott; Juliana M Leonard; Rich Boden; Dale Chaput; Clare Dennison; Edward Haller; Tara L Harmer; Abigail Anderson; Tiffany Arnold; Samantha Budenstein; Rikki Brown; Juan Brand; Jacob Byers; Jeanette Calarco; Timothy Campbell; Erica Carter; Max Chase; Montana Cole; Deandra Dwyer; Jonathon Grasham; Christopher Hanni; Ashlee Hazle; Cody Johnson; Ryan Johnson; Brandi Kirby; Katherine Lewis; Brianna Neumann; Tracy Nguyen; Jonathon Nino Charari; Ooreoluwa Morakinyo; Bengt Olsson; Shanetta Roundtree; Emily Skjerve; Ashley Ubaldini; Robert Whittaker
Journal:  Appl Environ Microbiol       Date:  2019-01-23       Impact factor: 4.792

3.  Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer.

Authors:  Christopher Neely; Charbel Bou Khalil; Alex Cervantes; Raquel Diaz; Angelica Escobar; Karen Ho; Stephen Hoefler; Hillary H Smith; Karla Abuyen; Pratixaben Savalia; Kenneth H Nealson; David Emerson; Benjamin Tully; Roman A Barco; Jan Amend
Journal:  Genome Announc       Date:  2018-02-01

4.  Sulfur Metabolism of Hydrogenovibrio thermophilus Strain S5 and Its Adaptations to Deep-Sea Hydrothermal Vent Environment.

Authors:  Lijing Jiang; Jie Lyu; Zongze Shao
Journal:  Front Microbiol       Date:  2017-12-13       Impact factor: 5.640

5.  Horizontal acquisition of hydrogen conversion ability and other habitat adaptations in the Hydrogenovibrio strains SP-41 and XCL-2.

Authors:  Giorgio Gonnella; Nicole Adam; Mirjam Perner
Journal:  BMC Genomics       Date:  2019-05-06       Impact factor: 3.969

Review 6.  Microbially Mediated Hydrogen Cycling in Deep-Sea Hydrothermal Vents.

Authors:  Nicole Adam; Mirjam Perner
Journal:  Front Microbiol       Date:  2018-11-23       Impact factor: 5.640

7.  Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera.

Authors:  Tomohiro Watanabe; Hisaya Kojima; Kazuhiro Umezawa; Chiaki Hori; Taichi E Takasuka; Yukako Kato; Manabu Fukui
Journal:  Front Microbiol       Date:  2019-02-25       Impact factor: 5.640

8.  Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO2 Fixation and 16S Tags of the Transcriptome in Incubation Experiments.

Authors:  Stefanie Böhnke; Katharina Sass; Giorgio Gonnella; Alexander Diehl; Charlotte Kleint; Wolfgang Bach; Rebecca Zitoun; Andrea Koschinsky; Daniela Indenbirken; Sylvia G Sander; Stefan Kurtz; Mirjam Perner
Journal:  Front Microbiol       Date:  2019-10-09       Impact factor: 5.640

9.  Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake.

Authors:  Charlotte D Vavourakis; Maliheh Mehrshad; Cherel Balkema; Rutger van Hall; Adrian-Ştefan Andrei; Rohit Ghai; Dimitry Y Sorokin; Gerard Muyzer
Journal:  BMC Biol       Date:  2019-08-22       Impact factor: 7.431

10.  The Eastern Nebraska Salt Marsh Microbiome Is Well Adapted to an Alkaline and Extreme Saline Environment.

Authors:  Sierra R Athen; Shivangi Dubey; John A Kyndt
Journal:  Life (Basel)       Date:  2021-05-15
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