Literature DB >> 28581725

Engineered Control of Genetic Variability Reveals Interplay among Quorum Sensing, Feedback Regulation, and Biochemical Noise.

Yadira Boada1, Alejandro Vignoni2, Jesús Picó1.   

Abstract

Stochastic fluctuations in gene expression trigger both beneficial and harmful consequences for cell behavior. Therefore, achieving a desired mean protein expression level while minimizing noise is of interest in many applications, including robust protein production systems in industrial biotechnology. Here, we consider a synthetic gene circuit combining intracellular negative feedback and cell-to-cell communication based on quorum sensing. Accounting for both intrinsic and extrinsic noise, stochastic simulations allow us to analyze the capability of the circuit to reduce noise strength as a function of its parameters. We obtain mean expression levels and noise strengths for all species under different scenarios, showing good agreement with system-wide available experimental data of protein abundance and noise in Escherichia coli. Our in silico experiments, validated by preliminary in vivo results, reveal significant noise attenuation in gene expression through the interplay between quorum sensing and negative feedback and highlight the differential role that they play in regard to intrinsic and extrinsic noise.

Entities:  

Keywords:  cellular noise; feedback control; noise attenuation; protein expression control; quorum sensing

Mesh:

Year:  2017        PMID: 28581725     DOI: 10.1021/acssynbio.7b00087

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  4 in total

1.  Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories.

Authors:  Yadira Boada; Alejandro Vignoni; Jesús Picó; Pablo Carbonell
Journal:  iScience       Date:  2020-06-23

Review 2.  Regulating, Measuring, and Modeling the Viscoelasticity of Bacterial Biofilms

Authors:  Samuel G V Charlton; Michael A White; Saikat Jana; Lucy E Eland; Pahala Gedara Jayathilake; J Grant Burgess; Jinju Chen; Anil Wipat; Thomas P Curtis
Journal:  J Bacteriol       Date:  2019-08-22       Impact factor: 3.490

3.  Computation of Single-Cell Metabolite Distributions Using Mixture Models.

Authors:  Mona K Tonn; Philipp Thomas; Mauricio Barahona; Diego A Oyarzún
Journal:  Front Cell Dev Biol       Date:  2020-12-22

4.  Modeling and Optimization of a Molecular Biocontroller for the Regulation of Complex Metabolic Pathways.

Authors:  Yadira Boada; Fernando N Santos-Navarro; Jesús Picó; Alejandro Vignoni
Journal:  Front Mol Biosci       Date:  2022-03-29
  4 in total

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