Literature DB >> 28573576

Serial Synchrotron X-Ray Crystallography (SSX).

Kay Diederichs1, Meitian Wang2.   

Abstract

Prompted by methodological advances in measurements with X-ray free electron lasers, it was realized in the last two years that traditional (or conventional) methods for data collection from crystals of macromolecular specimens can be complemented by synchrotron measurements on microcrystals that would individually not suffice for a complete data set. Measuring, processing, and merging many partial data sets of this kind requires new techniques which have since been implemented at several third-generation synchrotron facilities, and are described here. Among these, we particularly focus on the possibility of in situ measurements combined with in meso crystal preparations and data analysis with the XDS package and auxiliary programs.

Entities:  

Keywords:  Cryogenic temperature; Data collection; Data quality; In meso in situ; Lipidic cubic phase (LCP); Merging; Microcrystal; Room temperature (RT); Serial synchrotron crystallography (SSX); XDS; XSCALE

Mesh:

Substances:

Year:  2017        PMID: 28573576     DOI: 10.1007/978-1-4939-7000-1_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  X-ray and UV radiation-damage-induced phasing using synchrotron serial crystallography.

Authors:  Nicolas Foos; Carolin Seuring; Robin Schubert; Anja Burkhardt; Olof Svensson; Alke Meents; Henry N Chapman; Max H Nanao
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-06       Impact factor: 7.652

2.  Making a difference in multi-data-set crystallography: simple and deterministic data-scaling/selection methods.

Authors:  Greta M Assmann; Meitian Wang; Kay Diederichs
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-06-17       Impact factor: 7.652

3.  Synchrotron microcrystal native-SAD phasing at a low energy.

Authors:  Gongrui Guo; Ping Zhu; Martin R Fuchs; Wuxian Shi; Babak Andi; Yuan Gao; Wayne A Hendrickson; Sean McSweeney; Qun Liu
Journal:  IUCrJ       Date:  2019-05-03       Impact factor: 4.769

4.  Scanning electron microscopy as a method for sample visualization in protein X-ray crystallography.

Authors:  Emma V Beale; Anna J Warren; José Trincão; James Beilsten-Edmands; Adam D Crawshaw; Geoff Sutton; David Stuart; Gwyndaf Evans
Journal:  IUCrJ       Date:  2020-04-10       Impact factor: 4.769

5.  JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography.

Authors:  Filip Leonarski; Aldo Mozzanica; Martin Brückner; Carlos Lopez-Cuenca; Sophie Redford; Leonardo Sala; Andrej Babic; Heinrich Billich; Oliver Bunk; Bernd Schmitt; Meitian Wang
Journal:  Struct Dyn       Date:  2020-02-26       Impact factor: 2.920

Review 6.  Discerning best practices in XFEL-based biological crystallography - standards for nonstandard experiments.

Authors:  Alexander Gorel; Ilme Schlichting; Thomas R M Barends
Journal:  IUCrJ       Date:  2021-06-30       Impact factor: 4.769

7.  Sample manipulation and data assembly for robust microcrystal synchrotron crystallography.

Authors:  Gongrui Guo; Martin R Fuchs; Wuxian Shi; John Skinner; Evanna Berman; Craig M Ogata; Wayne A Hendrickson; Sean McSweeney; Qun Liu
Journal:  IUCrJ       Date:  2018-04-19       Impact factor: 4.769

8.  SLS-2 - the upgrade of the Swiss Light Source.

Authors:  Andreas Streun; Terence Garvey; Lenny Rivkin; Volker Schlott; Thomas Schmidt; Philip Willmott; Albin Wrulich
Journal:  J Synchrotron Radiat       Date:  2018-04-24       Impact factor: 2.616

9.  In situ serial crystallography for rapid de novo membrane protein structure determination.

Authors:  Chia-Ying Huang; Vincent Olieric; Nicole Howe; Rangana Warshamanage; Tobias Weinert; Ezequiel Panepucci; Lutz Vogeley; Shibom Basu; Kay Diederichs; Martin Caffrey; Meitian Wang
Journal:  Commun Biol       Date:  2018-08-27

10.  Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.

Authors:  Dorothee Liebschner; Pavel V Afonine; Matthew L Baker; Gábor Bunkóczi; Vincent B Chen; Tristan I Croll; Bradley Hintze; Li Wei Hung; Swati Jain; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Billy K Poon; Michael G Prisant; Randy J Read; Jane S Richardson; David C Richardson; Massimo D Sammito; Oleg V Sobolev; Duncan H Stockwell; Thomas C Terwilliger; Alexandre G Urzhumtsev; Lizbeth L Videau; Christopher J Williams; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-02       Impact factor: 7.652

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