Literature DB >> 28570984

In silico identification of vaccine candidates against Klebsiella oxytoca.

Sandipan Talukdar1, Udeshna Bayan1, Kandarpa Kr Saikia2.   

Abstract

Klebsiella oxytoca causes several diseases in immunocompromised as well as healthy individuals. Increasing resistance to a number of antibiotics makes treatment options limited. Prevention using vaccine could be an important solution to get rid of infections caused by Klebsiella oxytoca. In recent time, genome based approaches have contributed significantly in vaccine development. Our aim was to identify the most conserved and immunogenic antigens that can be considered as potential vaccine candidates. KEGG database was used to find out pathways unique to the bacteria. Subcellular localization of the protein sequences taken from the selected 36 pathways were predicted using PSORTb v3.0.2 and CELLO v2.5. Prediction of B cell epitope and the probability of the antigenicity were evaluated by using IEDB and Vaxijen respectively. BLASTp was done to find out the similarity of the selected proteins with the human proteome. Proteins failing to comply with the set parameters were filtered at each step. Finally, we identified 6 surface exposed proteins as potential vaccine candidates against Klebsiella oxytoca.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  B-cell epitope; Klebsiella oxytoca; Outer membrane protein; Reverse vaccinology; Vaccine

Mesh:

Substances:

Year:  2017        PMID: 28570984     DOI: 10.1016/j.compbiolchem.2017.05.003

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  4 in total

1.  Designing a less immunogenic nattokinase from Bacillus subtilis subsp. natto: a computational mutagenesis.

Authors:  Yoanes Maria Vianney; Stanley Evander Emeltan Tjoa; Reza Aditama; Sulisyto Emantoko Dwi Putra
Journal:  J Mol Model       Date:  2019-11-09       Impact factor: 1.810

Review 2.  Klebsiella oxytoca and Emerging Nosocomial Infections.

Authors:  Nakul Neog; Upasana Phukan; Minakshi Puzari; Mohan Sharma; Pankaj Chetia
Journal:  Curr Microbiol       Date:  2021-03-03       Impact factor: 2.188

3.  Immunoinformatics-Aided Design and Evaluation of a Potential Multi-Epitope Vaccine against Klebsiella Pneumoniae.

Authors:  Hamza Arshad Dar; Tahreem Zaheer; Muhammad Shehroz; Nimat Ullah; Kanwal Naz; Syed Aun Muhammad; Tianyu Zhang; Amjad Ali
Journal:  Vaccines (Basel)       Date:  2019-08-12

4.  A Metabolomic Approach for Predicting Diurnal Changes in Cortisol.

Authors:  Jarrett Eshima; Trenton J Davis; Heather D Bean; John Fricks; Barbara S Smith
Journal:  Metabolites       Date:  2020-05-13
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.