Literature DB >> 28568845

THE POLYTYPIC SPECIES REVISITED: GENETIC DIFFERENTIATION AND MOLECULAR PHYLOGENETICS OF THE TIGER SALAMANDER AMBYSTOMA TIGRINUM (AMPHIBIA: CAUDATA) COMPLEX.

H Bradley Shaffer1, Mark L McKnight1.   

Abstract

We present a phylogenetic analysis of the Ambystoma tigrinum complex, based on approximately 840 base pairs of mitochondrial-DNA sequence from the rapidly evolving D-loop and an adjacent intron. Our samples include populations of the continentally distributed species, A. tigrinum, plus all described species of Mexican ambystomatids. Sequence divergence is low, ranging from 0-8.5%, and most phylogenetic groupings are weakly supported statistically. We identified eight reasonably well-defined clades from the United States and Mexico, with the geographically isolated A. californiense from California as the probable sister group to the remaining taxa. Our sequence data are not capable of resolving the relationships among these clades, although the pattern of transitional-site evolution suggests that these eight lineages diverged during a period of rapid cladogenesis. We roughly calibrate a molecular clock and identify a few lineages that significantly deviate from the slow, baseline rate of 0.5-0.75% per million years. Our data also suggest that species boundaries for several U.S. and Mexican species need to be altered and that the concept of a continentally distributed, polytypic tiger salamander is not valid. © 1996 The Society for the Study of Evolution.

Entities:  

Keywords:  Ambystoma; D-loop; axolotl; biogeography; mitochondrial DNA; phylogeny; tiger salamander

Year:  1996        PMID: 28568845     DOI: 10.1111/j.1558-5646.1996.tb04503.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  22 in total

1.  Polymorphism of alternative splicing of major histocompatibility complex transcripts in wild tiger salamanders.

Authors:  Zafer Bulut; Cory R McCormick; David H Bos; J Andrew DeWoody
Journal:  J Mol Evol       Date:  2008-06-10       Impact factor: 2.395

2.  Rapid spread of invasive genes into a threatened native species.

Authors:  Benjamin M Fitzpatrick; Jarrett R Johnson; D Kevin Kump; Jeramiah J Smith; S Randal Voss; H Bradley Shaffer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

3.  Intraspecific heterochrony and life history evolution: decoupling somatic and sexual development in a facultatively paedomorphic salamander.

Authors:  T J Ryan; R D Semlitsch
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-12       Impact factor: 11.205

4.  Evolution of salamander life cycles: a major-effect quantitative trait locus contributes to discrete and continuous variation for metamorphic timing.

Authors:  S R Voss; J J Smith
Journal:  Genetics       Date:  2005-03-21       Impact factor: 4.562

5.  Molecular characterization of major histocompatibility complex class II alleles in wild tiger salamanders (Ambystoma tigrinum).

Authors:  David H Bos; J Andrew DeWoody
Journal:  Immunogenetics       Date:  2005-11-08       Impact factor: 2.846

6.  Depauperate major histocompatibility complex variation in the endangered reticulated flatwoods salamander (Ambystoma bishopi).

Authors:  Steven Tyler Williams; Carola A Haas; James H Roberts; Sabrina S Taylor
Journal:  Immunogenetics       Date:  2020-04-16       Impact factor: 2.846

7.  Retention of low-fitness genotypes over six decades of admixture between native and introduced tiger salamanders.

Authors:  Jarrett R Johnson; Benjamin M Fitzpatrick; H Bradley Shaffer
Journal:  BMC Evol Biol       Date:  2010-05-18       Impact factor: 3.260

8.  Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.

Authors:  Matthias Steinrücken; Jeffrey P Spence; John A Kamm; Emilia Wieczorek; Yun S Song
Journal:  Mol Ecol       Date:  2018-04-17       Impact factor: 6.185

9.  Geography is more important than life history in the recent diversification of the tiger salamander complex.

Authors:  Kathryn M Everson; Levi N Gray; Angela G Jones; Nicolette M Lawrence; Mary E Foley; Kelly L Sovacool; Justin D Kratovil; Scott Hotaling; Paul M Hime; Andrew Storfer; Gabriela Parra-Olea; Ruth Percino-Daniel; X Aguilar-Miguel; Eric M O'Neill; Luis Zambrano; H Bradley Shaffer; David W Weisrock
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-27       Impact factor: 11.205

10.  Large-scale variation in single nucleotide polymorphism density within the laboratory axolotl (Ambystoma mexicanum).

Authors:  Nataliya Timoshevskaya; S Randal Voss; Caitlin N Labianca; Cassity R High; Jeramiah J Smith
Journal:  Dev Dyn       Date:  2020-10-14       Impact factor: 3.780

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