Literature DB >> 28565665

PATTERNS IN PHYLOGENETIC TREE BALANCE WITH VARIABLE AND EVOLVING SPECIATION RATES.

Stephen B Heard1.   

Abstract

Aspects of phylogenetic tree shape, and in particular tree balance, provide clues to the workings of the macroevolutionary process. I use a simulation approach to explore patterns in tree balance for several models of the evolutionary process under which speciation rates vary through the history of diversifying clades. I demonstrate that when speciation rates depend on an evolving trait of individuals, and are therefore "heritable" along evolutionary lineages, the resulting phylogenies become imbalanced. However, imbalance also results from some (but not all) models of "nonheritable" speciation rate variation. The degree of imbalance increases with the magnitude of speciation rate variation, and then for gradual evolution (but not punctuated equilibria) reaches an asymptote short of the theoretical maximum. Very high levels of rate variation are required to produce imbalance matching that found in real data (estimated phylogenies from the systematic literature). I discuss implications of the simulation results for our understanding of macroevolution. © 1996 The Society for the Study of Evolution.

Entities:  

Keywords:  Macroevolution; phylogenetic trees; punctuated equilibria; speciation rates; tree balance; tree topology

Year:  1996        PMID: 28565665     DOI: 10.1111/j.1558-5646.1996.tb03604.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  9 in total

1.  Why abundant tropical tree species are phylogenetically old.

Authors:  Shaopeng Wang; Anping Chen; Jingyun Fang; Stephen W Pacala
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

2.  Ribosomal history reveals origins of modern protein synthesis.

Authors:  Ajith Harish; Gustavo Caetano-Anollés
Journal:  PLoS One       Date:  2012-03-12       Impact factor: 3.240

3.  The shape of human gene family phylogenies.

Authors:  James A Cotton; Roderic D M Page
Journal:  BMC Evol Biol       Date:  2006-08-29       Impact factor: 3.260

4.  Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility.

Authors:  Gustavo Caetano-Anollés; Minglei Wang; Derek Caetano-Anollés
Journal:  PLoS One       Date:  2013-08-21       Impact factor: 3.240

5.  The tree balance signature of mass extinction is erased by continued evolution in clades of constrained size with trait-dependent speciation.

Authors:  Guan-Dong Yang; Paul-Michael Agapow; Gabriel Yedid
Journal:  PLoS One       Date:  2017-06-23       Impact factor: 3.240

6.  Disentangling the drivers of diversification in an imperiled group of freshwater fishes (Cyprinodontiformes: Goodeidae).

Authors:  Kimberly L Foster; Kyle R Piller
Journal:  BMC Evol Biol       Date:  2018-07-18       Impact factor: 3.260

7.  On Sackin's original proposal: the variance of the leaves' depths as a phylogenetic balance index.

Authors:  Tomás M Coronado; Arnau Mir; Francesc Rosselló; Lucía Rotger
Journal:  BMC Bioinformatics       Date:  2020-04-23       Impact factor: 3.169

8.  How the dynamics and structure of sexual contact networks shape pathogen phylogenies.

Authors:  Katy Robinson; Nick Fyson; Ted Cohen; Christophe Fraser; Caroline Colijn
Journal:  PLoS Comput Biol       Date:  2013-06-20       Impact factor: 4.475

9.  Universal artifacts affect the branching of phylogenetic trees, not universal scaling laws.

Authors:  Cristian R Altaba
Journal:  PLoS One       Date:  2009-02-26       Impact factor: 3.240

  9 in total

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