| Literature DB >> 28561772 |
Carla Fernandes1,2, Andreia Palmeira3,4, Inês I Ramos5, Carlos Carneiro6, Carlos Afonso7,8, Maria Elizabeth Tiritan9,10,11, Honorina Cidade12,13, Paula C A G Pinto14, M Lúcia M F S Saraiva15, Salette Reis16, Madalena M M Pinto17,18.
Abstract
Searching of new enantiomerically pure chiral derivatives of xanthones (CDXs) with potential pharmacological properties, particularly those with anti-inflammatory activity, has remained an area of interest of our group. Herein, we describe in silico studies and in vitro inhibitory assays of cyclooxygenases (COX-1 and COX-2) for different enantiomeric pairs of CDXs. The evaluation of the inhibitory activities was performed by using the COX Inhibitor Screening Assay Kit. Docking simulations between the small molecules (CDXs; known ligands and decoys) and the enzyme targets were undertaken with AutoDock Vina embedded in PyRx-Virtual Screening Tool software. All the CDXs evaluated exhibited COX-1 and COX-2 inhibition potential as predicted. Considering that the (S)-(-)-enantiomer of the nonsteroidal anti-inflammatory drug ketoprofen preferentially binds to albumin, resulting in lower free plasma concentration than (R)-(+)-enantiomer, protein binding affinity for CDXs was also evaluated by spectrofluorimetry as well as in in silico. For some CDXs enantioselectivity was observed.Entities:
Keywords: albumin; chiral derivatives of xanthones; cyclooxygenase; docking; enantioselectivity
Year: 2017 PMID: 28561772 PMCID: PMC5490407 DOI: 10.3390/ph10020050
Source DB: PubMed Journal: Pharmaceuticals (Basel) ISSN: 1424-8247
Figure 1Structures of the enantiomers of CDXs 1–3.
Inhibitory effects of CDXs on COX-1 and COX-2.
| CDX | COX-1 | COX-2 |
|---|---|---|
| (S)-(−)-CDX1 | 87.6 ± 2.1 | 80.1 ± 12.8 |
| (R)-(+)-CDX1 | 79.6 ± 5.0 | 84.7 ± 5.7 |
| (S)-(−)-CDX2 | 82.9 ± 5.2 | 85.7 ± 4.5 |
| (R)-(+)-CDX2 | 66.8 ± 1.6 | 73.2 ± 0.4 |
| (S)-(+)-CDX3 | 91.7 ± 10.7 | 93.4 ± 11.4 |
| (R)-(−)-CDX3 | 75.2 ± 9.0 | 75.1 ± 7.2 |
| Indomethacin | 83.2 ± 6.4 | 80.7 ± 9.5 |
Values correspond to percentage of enzyme inhibition (mean ± standard deviation). Each compound was analyzed in triplicate in two independent days. The concentration of CDXs was 20 µmol/L. Indomethacin 1 µmol/L was used as positive control.
Docking scores of corresponding test compounds at COX-1 and COX-2 targets.
| Compounds | Docking Score (kcal/mol) | ||
|---|---|---|---|
| COX-1 | COX-2 | ||
| Known ligands | Diclofenac | −6.1 | −7.9 |
| Indomethacin | −5.1 | −7.9 | |
| Naproxen | −7.8 | ||
| Piroxicam | −5.2 | ||
| Celecoxib | −11.5 | ||
| Valdecoxib | −9.5 | ||
| Ligands from database | −7.8 | −9.3 | |
| Decoys from database | −7.3 | −7.6 | |
| ( | −4.2 | −7.8 | |
| ( | −4.5 | −8.0 | |
| ( | −3.4 | −6.5 | |
| ( | −5.4 | −7.0 | |
| ( | −5.3 | −6.9 | |
| ( | −5.6 | −7.5 | |
Figure 2(A) COX-2 ribbon representation. (B) Comparison of docking poses of CDX1 enantiomers in COX-2 binding site. (R) and (S) enantiomers are represented in pink and yellow sticks, respectively. (C) Comparison of docking poses of CDX3 enantiomers in COX-2 binding site. (R) and (S) enantiomers are represented in light and dark blue sticks, respectively. Hydrogen interactions are represented as yellow dashes and the residues evolved are represented as green lines and labeled.
HSA binding parameters obtained for the CDXs and predicted docking scores between HSA and CDXs.
| Compound | Kd | ∆G Binding | Docking Score (kcal/mol) | ||
|---|---|---|---|---|---|
| Known ligands | Azaprozone | −5.9 | |||
| Diazepam | −7.1 | ||||
| Fusidic acid | −5.8 | ||||
| ( | −7.3 | ||||
| Iophenoxid acid | −4.4 | ||||
| Naproxen | −7.9 | ||||
| Warfarin | −8.5 | ||||
| ( | 61.8 ± 6.5 | 109.6 ± 1.6 | −2.4 ± 0.2 | −7.3 | |
| ( | 23.6 ± 0.8 | 105.3 ± 0.4 | −1.9 ± 0.1 | −7.0 | |
| ( | 29.2 ± 0.9 | 108.2 ± 0.2 | −2.0 ± 0.1 | −7.2 | |
| ( | 24.7 ± 1.1 | 107.4 ± 5.4 | −1.9 ± 0.1 | −7.2 | |
| ( | 26.4 ± 1.2 | 113.2 ± 1.4 | −1.9 ± 0.1 | −7.2 | |
| ( | 31.4 ± 2.0 | 116.2 ± 0.6 | −2.0 ± 0.2 | −7.0 | |
Values correspond to the mean ± standard deviation of triplicate runs; Kd corresponds to the dissociation constant of CDX-HSA in μM; Ymax corresponds to the maximum percentage of HSA fluorescence quenching; ∆G for binding expressed in kcal/mol.
Figure 3Interactions of crystallographic (S)-ibuprofen (yellow sticks) (A) and docked CDX1 enantiomers (B) with HSA. (R)- and (S)-enantiomers are represented in pink and yellow sticks, respectively. Hydrogen interactions are represented as yellow dashes and the residues evolved are represented as green lines and labeled.