Literature DB >> 28561664

Data Commons to Support Pediatric Cancer Research.

Samuel L Volchenboum1, Suzanne M Cox1, Allison Heath1, Adam Resnick1, Susan L Cohn1, Robert Grossman1.   

Abstract

The falling costs and increasing fidelity of high-throughput biomedical research data have led to a renaissance in cancer surveillance and treatment. Yet, the amount, velocity, and complexity of these data have overcome the capacity of the increasing number of researchers collecting and analyzing this information. By centralizing the data, processing power, and tools, there is a valuable opportunity to share resources and thus increase the efficiency, power, and impact of research. Herein, we describe current data commons and how they operate in the oncology landscape, including an overview of the International Neuroblastoma Risk Group data commons as a paradigm case. We outline the practical steps and considerations in building data commons. Finally, we discuss the unique opportunities and benefits of creating a data commons within the context of pediatric cancer research, highlighting the particular advantages for clinical oncology and suggested next steps.

Entities:  

Mesh:

Year:  2017        PMID: 28561664     DOI: 10.1200/EDBK_175029

Source DB:  PubMed          Journal:  Am Soc Clin Oncol Educ Book        ISSN: 1548-8748


  13 in total

Review 1.  Progress Toward Cancer Data Ecosystems.

Authors:  Robert L Grossman
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

Review 2.  A Cardio-Oncology Data Commons: Lessons from Pediatric Oncology.

Authors:  Anant Mandawat; Logan Eberly; William Border
Journal:  Curr Cardiol Rep       Date:  2019-09-13       Impact factor: 2.931

3.  Applications of Artificial Intelligence in Pediatric Oncology: A Systematic Review.

Authors:  Siddhi Ramesh; Sukarn Chokkara; Timothy Shen; Ajay Major; Samuel L Volchenboum; Anoop Mayampurath; Mark A Applebaum
Journal:  JCO Clin Cancer Inform       Date:  2021-12

4.  Informatics Methods and Infrastructure Needed to Study Factors Associated with High Incidence of Pediatric Brain and Central Nervous System Tumors in Kentucky.

Authors:  Eric B Durbin; W Jay Christian; Isaac Hands; Mateusz P Koptyra; Jong Cheol Jong; Tom C Badgett
Journal:  J Registry Manag       Date:  2020

5.  Tailoring Therapy for Children With Neuroblastoma on the Basis of Risk Group Classification: Past, Present, and Future.

Authors:  Wayne H Liang; Sara M Federico; Wendy B London; Arlene Naranjo; Meredith S Irwin; Samuel L Volchenboum; Susan L Cohn
Journal:  JCO Clin Cancer Inform       Date:  2020-10

6.  Challenges associated with retrospective analysis of left ventricular function using clinical echocardiograms from a multicenter research study.

Authors:  Ritu Sachdeva; Kayla L Stratton; David E Cox; Saro H Armenian; Aarti Bhat; William L Border; Kasey J Leger; Wendy M Leisenring; Lillian R Meacham; Karim T Sadak; Shanti Narasimhan; Eric J Chow; Paul C Nathan
Journal:  Echocardiography       Date:  2021-01-24       Impact factor: 1.724

Review 7.  Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data.

Authors:  Robert L Grossman
Journal:  Trends Genet       Date:  2019-01-25       Impact factor: 11.639

8.  The Global academic research organization network: Data sharing to cure diseases and enable learning health systems.

Authors:  Masanori Fukushima; Christopher Austin; Norihiro Sato; Tatsuya Maruyama; Eileen Navarro; Mitra Rocca; Jacques Demotes; Melissa Haendel; Samuel L Volchenboum; Matthew Cowperthwaite; Jonathan C Silverstein; Chris Webb; Ida Sim; Marianne Chase; John Speakman; Erika Augustine; Daniel E Ford; Rebecca Kush
Journal:  Learn Health Syst       Date:  2018-12-03

Review 9.  Using big data in pediatric oncology: Current applications and future directions.

Authors:  Ajay Major; Suzanne M Cox; Samuel L Volchenboum
Journal:  Semin Oncol       Date:  2020-02-29       Impact factor: 5.385

10.  Immunogenomic determinants of tumor microenvironment correlate with superior survival in high-risk neuroblastoma.

Authors:  Riyue Bao; Stefani Spranger; Kyle Hernandez; Yuanyuan Zha; Peter Pytel; Jason J Luke; Thomas F Gajewski; Samuel L Volchenboum; Susan L Cohn; Ami V Desai
Journal:  J Immunother Cancer       Date:  2021-07       Impact factor: 13.751

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