Literature DB >> 28558120

Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data.

Matteo Masetti1, Francesco Musiani2, Mattia Bernetti1,3, Federico Falchi3, Andrea Cavalli1,3, Stefano Ciurli2, Maurizio Recanatini1.   

Abstract

Force-field parameters are developed for a multisite model of Ni(II) ions to be used in molecular dynamics simulations combined to enhanced sampling methods. The performances of two charge-partitioning schemes are validated by taking into account structural, thermodynamic, and kinetic observables. One of the two models, featuring partial charges on the dummy atoms only, matches both Ni(II) free energy of solvation and water exchange rates. Such model is particularly suited to study complexation events at a fully dynamic description.
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  dummy model; force-field parameterization; free energy of solvation; nickel ion; water exchange rate

Year:  2017        PMID: 28558120     DOI: 10.1002/jcc.24827

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  2 in total

1.  Systematic Parametrization of Divalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Authors:  Zhen Li; Lin Frank Song; Pengfei Li; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2020-06-29       Impact factor: 6.006

2.  Extending the Nonbonded Cationic Dummy Model to Account for Ion-Induced Dipole Interactions.

Authors:  Qinghua Liao; Anna Pabis; Birgit Strodel; Shina Caroline Lynn Kamerlin
Journal:  J Phys Chem Lett       Date:  2017-10-23       Impact factor: 6.475

  2 in total

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