| Literature DB >> 28558120 |
Matteo Masetti1, Francesco Musiani2, Mattia Bernetti1,3, Federico Falchi3, Andrea Cavalli1,3, Stefano Ciurli2, Maurizio Recanatini1.
Abstract
Force-field parameters are developed for a multisite model of Ni(II) ions to be used in molecular dynamics simulations combined to enhanced sampling methods. The performances of two charge-partitioning schemes are validated by taking into account structural, thermodynamic, and kinetic observables. One of the two models, featuring partial charges on the dummy atoms only, matches both Ni(II) free energy of solvation and water exchange rates. Such model is particularly suited to study complexation events at a fully dynamic description.Entities:
Keywords: dummy model; force-field parameterization; free energy of solvation; nickel ion; water exchange rate
Year: 2017 PMID: 28558120 DOI: 10.1002/jcc.24827
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376