Literature DB >> 28554829

Bioinformatics can boost metabolomics research.

René Meier1, Christoph Ruttkies1, Hendrik Treutler1, Steffen Neumann2.   

Abstract

Metabolomics is the modern term for the field of small molecule research in biology and biochemistry. Currently, metabolomics is undergoing a transition where the classic analytical chemistry is combined with modern cheminformatics and bioinformatics methods, paving the way for large-scale data analysis. We give some background on past developments, highlight current state-of-the-art approaches, and give a perspective on future requirements.
Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Keywords:  Cloud computing; Mass spectrometry; Metabolite identification; Metabolite profiling; Metabolomics; Workflows

Mesh:

Year:  2017        PMID: 28554829     DOI: 10.1016/j.jbiotec.2017.05.018

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  12 in total

1.  Comparison of Targeted and Untargeted Approaches in Breath Analysis for the Discrimination of Lung Cancer from Benign Pulmonary Diseases and Healthy Persons.

Authors:  Michalis Koureas; Dimitrios Kalompatsios; Grigoris D Amoutzias; Christos Hadjichristodoulou; Konstantinos Gourgoulianis; Andreas Tsakalof
Journal:  Molecules       Date:  2021-04-29       Impact factor: 4.411

2.  KniMet: a pipeline for the processing of chromatography-mass spectrometry metabolomics data.

Authors:  Sonia Liggi; Christine Hinz; Zoe Hall; Maria Laura Santoru; Simone Poddighe; John Fjeldsted; Luigi Atzori; Julian L Griffin
Journal:  Metabolomics       Date:  2018-03-16       Impact factor: 4.290

Review 3.  Current Challenges in Plant Eco-Metabolomics.

Authors:  Kristian Peters; Anja Worrich; Alexander Weinhold; Oliver Alka; Gerd Balcke; Claudia Birkemeyer; Helge Bruelheide; Onno W Calf; Sophie Dietz; Kai Dührkop; Emmanuel Gaquerel; Uwe Heinig; Marlen Kücklich; Mirka Macel; Caroline Müller; Yvonne Poeschl; Georg Pohnert; Christian Ristok; Victor Manuel Rodríguez; Christoph Ruttkies; Meredith Schuman; Rabea Schweiger; Nir Shahaf; Christoph Steinbeck; Maria Tortosa; Hendrik Treutler; Nico Ueberschaar; Pablo Velasco; Brigitte M Weiß; Anja Widdig; Steffen Neumann; Nicole M van Dam
Journal:  Int J Mol Sci       Date:  2018-05-06       Impact factor: 5.923

4.  A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics.

Authors:  Elizabeth C Considine; Reza M Salek
Journal:  Metabolites       Date:  2019-03-05

Review 5.  Computational Oncology in the Multi-Omics Era: State of the Art.

Authors:  Guillermo de Anda-Jáuregui; Enrique Hernández-Lemus
Journal:  Front Oncol       Date:  2020-04-07       Impact factor: 6.244

6.  Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species.

Authors:  Kristian Peters; Hendrik Treutler; Stefanie Döll; Alida S D Kindt; Thomas Hankemeier; Steffen Neumann
Journal:  Metabolites       Date:  2019-10-11

Review 7.  Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives.

Authors:  Luca Ambrosino; Michael Tangherlini; Chiara Colantuono; Alfonso Esposito; Mara Sangiovanni; Marco Miralto; Clementina Sansone; Maria Luisa Chiusano
Journal:  Mar Drugs       Date:  2019-10-11       Impact factor: 5.118

8.  The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.

Authors:  Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; Andreas Tauch; Ulrike Trojahn; Björn Usadel; Oliver Kohlbacher
Journal:  F1000Res       Date:  2019-11-07

9.  The metabolomic quest for a biomarker in chronic kidney disease.

Authors:  Robert Davies
Journal:  Clin Kidney J       Date:  2018-06-02

Review 10.  Potential for Novel Biomarkers in Diabetes-Associated Chronic Kidney Disease: Epigenome, Metabolome, and Gut Microbiome.

Authors:  Ashani Lecamwasam; Elif I Ekinci; Richard Saffery; Karen M Dwyer
Journal:  Biomedicines       Date:  2020-09-10
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