Literature DB >> 28550376

Development of an AMBER-compatible transferable force field for poly(ethylene glycol) ethers (glymes).

Nathalia S V Barbosa1, Yong Zhang2,3, Eduardo R A Lima1, Frederico W Tavares4,5, Edward J Maginn6,7.   

Abstract

An all-atom force field consistent with the general AMBER force field (GAFF) format for poly(ethylene glycol) dimethyl ether (diglyme or G2) was developed by fitting to experimental liquid densities and dielectric constants. Not surprisingly, the new force field gives excellent agreement with experimental liquid phase densities and dielectric constants over a wide temperature range. Other dynamic and thermodynamic properties of liquid G2 such as its self-diffusion coefficient, shear viscosity, and vaporization enthalpy were also calculated and compared to experimental data. For all of the properties studied, the performance of the proposed new force field is better than that of the standard GAFF force field. The force field parameters were transferred to model two other poly(ethylene glycol) ethers: monoglyme (G1) and tetraglyme (G4). The predictive ability of the modified force field for G1 and G4 was significantly better than that of the original GAFF force field. The proposed force field provides an alternative option for the simulation of mixtures containing glymes using GAFF-compatible force fields, particularly for electrochemical applications. The accuracy of a previously published force field based on the OPLS-AA format and the accuracies of two modified versions of that force field were also examined for G1, G2, and G4. It was found that the original OPLS-AA force field is superior to the modified versions of it, and that it has a similar accuracy to the proposed new GAFF-compatible force field. Graphical abstract Transferability of an AMBER-compatible force field parameterized for G2 to other glymes.

Entities:  

Keywords:  Dielectric constant; General AMBER force field; Glymes; Transferability

Year:  2017        PMID: 28550376     DOI: 10.1007/s00894-017-3355-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  17 in total

1.  Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking.

Authors:  José Mario Martínez; Leandro Martínez
Journal:  J Comput Chem       Date:  2003-05       Impact factor: 3.376

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  A new type of sample tube for reducing convection effects in PGSE-NMR measurements of self-diffusion coefficients of liquid samples.

Authors:  Kikuko Hayamizu; William S Price
Journal:  J Magn Reson       Date:  2004-04       Impact factor: 2.229

4.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

5.  Structures of [Li(glyme)](+) complexes and their interactions with anions in equimolar mixtures of glymes and Li[TFSA]: analysis by molecular dynamics simulations.

Authors:  Seiji Tsuzuki; Wataru Shinoda; Masaru Matsugami; Yasuhiro Umebayashi; Kazuhide Ueno; Toshihiko Mandai; Shiro Seki; Kaoru Dokko; Masayoshi Watanabe
Journal:  Phys Chem Chem Phys       Date:  2015-01-07       Impact factor: 3.676

6.  A revised quantum chemistry-based potential for poly(ethylene oxide) and its oligomers in aqueous solution.

Authors:  Grant D Smith; Oleg Borodin; Dmitry Bedrov
Journal:  J Comput Chem       Date:  2002-11-30       Impact factor: 3.376

7.  Reliable Viscosity Calculation from Equilibrium Molecular Dynamics Simulations: A Time Decomposition Method.

Authors:  Yong Zhang; Akihito Otani; Edward J Maginn
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

8.  Glymes as Versatile Solvents for Chemical Reactions and Processes: from the Laboratory to Industry.

Authors:  Shaokun Tang; Hua Zhao
Journal:  RSC Adv       Date:  2014       Impact factor: 3.361

9.  Molecular Topology and Local Dynamics Govern the Viscosity of Imidazolium-Based Ionic Liquids.

Authors:  Yong Zhang; Lianjie Xue; Fardin Khabaz; Rose Doerfler; Edward L Quitevis; Rajesh Khare; Edward J Maginn
Journal:  J Phys Chem B       Date:  2015-11-11       Impact factor: 2.991

10.  A simple AIMD approach to derive atomic charges for condensed phase simulation of ionic liquids.

Authors:  Yong Zhang; Edward J Maginn
Journal:  J Phys Chem B       Date:  2012-08-15       Impact factor: 2.991

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