| Literature DB >> 28550268 |
Raffaella Willmann1,2, Heather Gordish-Dressman3, Sarina Meinen2, Markus A Rüegg2, Qing Yu3, Kanneboyina Nagaraju3, Ayar Kumar4, Mahasweta Girgenrath4, Caroline B M Coffey5, Vivian Cruz5, Pam M Van Ry5, Laurent Bogdanik6, Cathleen Lutz6, Anne Rutkowski7, Dean J Burkin5.
Abstract
Laminin-α2 related Congenital Muscular Dystrophy (LAMA2-CMD) is a progressive muscle disease caused by partial or complete deficiency of laminin-211, a skeletal muscle extracellular matrix protein. In the last decade, basic science research has queried underlying disease mechanisms in existing LAMA2-CMD murine models and identified possible clinical targets and pharmacological interventions. Experimental rigor in preclinical studies is critical to efficiently and accurately quantify both negative and positive results, degree of efficiency of potential therapeutics and determine whether to move a compound forward for additional preclinical testing. In this review, we compare published available data measured to assess three common parameters in the widely used mouse model DyW, that mimics LAMA2-CMD, we quantify variability and analyse its possible sources. Finally, on the basis of this analysis, we suggest standard set of assessments and the use of available standardized protocols, to reduce variability of outcomes in the future and to improve the value of preclinical research.Entities:
Keywords: LAMA2-CMD; LAMA2-RD; MDC1A; mouse models; preclinical
Mesh:
Substances:
Year: 2017 PMID: 28550268 PMCID: PMC5467719 DOI: 10.3233/JND-170217
Source DB: PubMed Journal: J Neuromuscul Dis
Number of data points and mice included in this analysis
| Measurement | Total number of data points | Number of mice | ||||
| DyW–/– | WT | Total | DyW–/– | WT | Total | |
| Survival | 117 | N/A | 117 | 117 | N/A | 117 |
| Body weight | 1126 | 395 | 1521 | 555 | 138 | 693 |
| PenH | 130 | 128 | 258 | 55 | 50 | 105 |
| PenH/BW | 125 | 126 | 251 | 51 | 48 | 99 |
Fig.1Kaplan-Meier plot of DyW survival by laboratory. Survival estimates are shown for each laboratory along with a reference line at 50% survival.
Comparison of median survival (natural deaths) by laboratory. Overall comparison between all laboratories and pairwise comparisons between each laboratory pair are shown
| Laboratory | N (observed) | Median | SE | 95% CI | Overall | Pairwise comparisons of |
| survival | median survival time | |||||
| between laboratories | ||||||
| Lab A | 20 | 82 | 8.2 | 67–98 | <0.0001 | Lab A vs. Lab B ( |
| Lab B | 34 | 44 | 2.2 | 37–47 | Lab A vs. Lab C ( | |
| Lab C | 67 | 84 | 10.3 | 61–93 | Lab A vs. Lab D ( | |
| Lab D | 16 | 34 | 5.3 | 24–39 | Lab B vs. Lab C ( | |
| Lab B vs. Lab D ( | ||||||
| Lab C vs. Lab D ( |
Fig.2DyW body weight over time by laboratory. The change in body weight of DyW mice over time is shown for each of the four laboratories. Individual body weights are represented with open circles and regression lines from the mixed effects linear model are represented by solid lines.
Fig.3WT (C57BL/6) body weight over time by laboratory. The change in body weight of WT mice over time is shown for each of the three laboratories reporting results. Individual body weights are represented with open circles and regression lines from the mixed effects linear model are represented by solid lines.
Fig.4Wild-type body weight distribution in three laboratories. Histograms of body weight for all WT mice from three laboratories are shown. For each laboratory, the vertical reference line represents the mean for that laboratory.
Predictability of survival by body weight in DyW mice at ages 1 to 8 weeks
| Week | N | r2 | % variability in survival | β coefficient (95% CI) | |
| described by body weight | |||||
| 1 | 34 | 0.007 | 0.63 | 0.7% | 1.29 (–4.08–6.67) |
| 2 | 52 | 0.021 | 0.30 | 2.1% | 1.99 (–1.83–5.82) |
| 3 | 58 | 0.086 | 0.025 | 8.6% | 3.92 (0.50–7.33) |
| 4 | 50 | 0.151 | 0.005 | 15.1% | 3.29 (1.03–5.56) |
| 6 | 29 | 0.359 | 0.001 | 35.9% | 3.63 (1.71–5.55) |
| 7 | 23 | 0.205 | 0.030 | 20.5% | 1.80 (0.19–3.41) |
| 8 | 9 | 0.024 | 0.69 | 2.4% | –0.66 (–4.42–3.10) |
Most statistically significant (by the magnitude of both the p-value and the beta coefficient) is highlighted in bold.
Fig.5Body weight normalized PenH values over time in both DyW and WT mice. The change in logarithm transformed body weight normalized PenH values (PenH/BW) over time is shown for both WT and DyW mice from the two laboratories reporting results. Individual log PenH/BW in WT mice are represented with circles and regression lines from the mixed effects linear model are represented by solid lines. Individual log PenH/BW in DyW mice are represented with X’s and regression lines from the mixed effects linear model are represented by dashed lines.
Fig.6Variability of PenH/BW values. The variability observed at different ages in PenH/BW values in the two labs reporting results are shown 6A and 6B. Dots and X’s represent the mean PenH/BW value for all mice of that age, and bars represent 95% confidence intervals. Sample numbers are indicated below each bar.
Comparison of respiratory values
| Measurement | Lab A | Lab D | ||||||
| WT | DyW–/– | WT | DyW–/– | |||||
| N | Mean±SD | N | Mean±SD | N | Mean±SD | N | Mean±SD | |
| Exp. Flow (mL/s) | 36 | 3.668±1.224 | 46 | 2.388±0.797 | 94 | 3.420±0.991 | 93 | 2.043±0.615 |
| Insp. Flow (mL/s) | 36 | 5.906±1.620 | 46 | 4.109±1.532 | 94 | 6.382±1.537 | 93 | 3.752±1.086 |
| Breath rate (BPM) | 34 | 462±51 | 39 | 426±64 | 94 | 468±76 | 93 | 392±61 |
| Tidal volume (mL) | 34 | 0.174±0.042 | 39 | 0.129±0.041 | 94 | 0.174±0.049 | 93 | 0.115±0.032 |
Fig.7Tidal volume and Breath rate over time in both WT and DyW mice. (A) The change in tidal volume over time is shown for both WT and DyW mice from the two laboratories reporting results. Individual tidal volume in WT mice are represented with circles and regression lines from the mixed effects linear model are represented by solid lines. Individual tidal volume in DyW mice are represented with X’s and regression lines from the mixed effects linear model are represented by dashed lines. (B) The change in breath rate over time is shown for both WT and DyW mice from the two laboratories reporting results. Individual breath rate in WT mice are represented with circles and regression lines from the mixed effects linear model are represented by solid lines. Individual tidal volume in DyW mice are represented with X’s and regression lines from the mixed effects linear model are represented by dashed lines.
Comparison of vitamin content in four rodent food products from three brands
| Vit A (IU/g) | Vit E (mg/kg) | Vit K3 (mg/kg) | Vit B1 (mg/kg) | |
| Lab A | 12.6 | 100 | 40 | 27 |
| Lab B | 20 | 30.2 | 20 | 79 |
| Lab C | 16 | 200 | 5 | 24 |
| Lab D | 29 | 75 | 1.9 | 10 |
Sample size and power estimates using observed data
| Age | Body weight | PenH/BW | Exp. flow | Insp. Flow | Tidal volume | Breath rate | |
| (weeks) | |||||||
| 3 | Power to detect a significant difference with 12 mice per group | 69.0 | 97.2 | 51.2 | 72.7 | 17.5 | 11.1 |
| N needed (per group) to detect a significant difference at 80% power | 16 | 7 | 23 | 15 | 81 | 169 | |
| 4 | Power to detect a significant difference with 12 mice per group | 99.9 | 98.9 | 72.9 | 99.0 | 93.9 | 44.9 |
| N needed (per group) to detect a significant difference at 80% power | 5 | 7 | 15 | 6 | 9 | 27 | |
| 5 | Power to detect a significant difference with 12 mice per group | 99.9 | 98.5 | 99.8 | 99.9 | 99.7 | 80.4 |
| N needed (per group) to detect a significant difference at 80% power | 3 | 7 | 5 | 4 | 6 | 12 | |
| 6 | Power to detect a significant difference with 12 mice per group | 99.9 | 70.0 | 98.4 | 99.5 | 99.9 | 63.9 |
| N needed (per group) to detect a significant difference at 80% power | 3 | 15 | 7 | 6 | 5 | 17 | |
| 7 | Power to detect a significant difference with 12 mice per group | 99.9 | 99.9 | 99.9 | 99.9 | 97.7 | 52.6 |
| N needed (per group) to detect a significant difference at 80% power | 3 | 4 | 5 | 4 | 7 | 22 | |
| 8 | Power to detect a significant difference with 12 mice per group | 99.9 | 99.1 | 93.9 | 94.5 | 80.2 | 74.7 |
| N needed (per group) to detect a significant difference at 80% power | 3 | 6 | 9 | 8 | 12 | 14 | |
| 9 | Power to detect a significant difference with 12 mice per group | 99.9 | 99.9 | 99.9 | 99.9 | 99.7 | 94.1 |
| N needed (per group) to detect a significant difference at 80% power | 4 | 4 | 3 | 3 | 6 | 9 | |
| 10 | Power to detect a significant difference with 12 mice per group | 99.9 | 93.5 | 99.5 | 99.2 | 61.4 | 89.6 |
| N needed (per group) to detect a significant difference at 80% power | 3 | 9 | 14 | 6 | 18 | 10 |
Recommended standards for data collection and result reporting in DyW
| Reporting | |
| Strain | Mutant strain, wild-type strain, sources, gender |
| Food | Report brand and product number, use of softened food |
| Sample size | Report considerations on sample size |
| Other reporting | Blinding and randomization |
| Body weight | In grams, at 1,2,3,4,5,6,8 wk, report peak weight of each week, use Kaplan-Meier plots |
| Fibrosis | H&E with quantitation as % of area in TA and Triceps at 4,6,8 wk |
| CNF | Percentage in TA and Triceps at 4,6,8 wk |
| CK | In U/ml at 4 and 8 wk |
| Locomotion | Movement time and rest time in seconds at 4,6,8 wk |