Literature DB >> 28550046

Genome instability: a conserved mechanism of ageing?

Jan Vijg1, Xiao Dong2, Brandon Milholland2, Lei Zhang2.   

Abstract

DNA is the carrier of genetic information and the primary template from which all cellular information is ultimately derived. Changes in the DNA information content through mutation generate diversity for evolution through natural selection but are also a source of deleterious effects. It has since long been hypothesized that mutation accumulation in somatic cells of multicellular organisms could causally contribute to age-related cellular degeneration and death. Assays to detect different types of mutations, from base substitutions to large chromosomal aberrations, have been developed and show unequivocally that mutations accumulate in different tissues and cell types of ageing humans and animals. More recently, next-generation sequencing-based methods have been developed to accurately determine the complete landscape of base substitution mutations in single cells. The first results show that the somatic mutation rate is much higher than the germline mutation rate and that base substitution loads in somatic cells are high enough to potentially affect cellular function.
© 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  DNA mutation; DNA repair; Somatic mutation; ageing

Mesh:

Year:  2017        PMID: 28550046      PMCID: PMC5988260          DOI: 10.1042/EBC20160082

Source DB:  PubMed          Journal:  Essays Biochem        ISSN: 0071-1365            Impact factor:   8.000


  65 in total

1.  Microsatellite instability (MSI) increases with age in normal somatic cells.

Authors:  Mary I Coolbaugh-Murphy; Jingping Xu; Louis S Ramagli; Barry W Brown; Michael J Siciliano
Journal:  Mech Ageing Dev       Date:  2005-10       Impact factor: 5.432

2.  Increased cell-to-cell variation in gene expression in ageing mouse heart.

Authors:  Rumana Bahar; Claudia H Hartmann; Karl A Rodriguez; Ashley D Denny; Rita A Busuttil; Martijn E T Dollé; R Brent Calder; Gary B Chisholm; Brad H Pollock; Christoph A Klein; Jan Vijg
Journal:  Nature       Date:  2006-06-22       Impact factor: 49.962

3.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

4.  Four-color FISH for the detection of low-level aneuploidy in interphase cells.

Authors:  Francesca Faggioli; Jan Vijg; Cristina Montagna
Journal:  Methods Mol Biol       Date:  2014

5.  Variation in genome-wide mutation rates within and between human families.

Authors:  Donald F Conrad; Jonathan E M Keebler; Mark A DePristo; Sarah J Lindsay; Yujun Zhang; Ferran Casals; Youssef Idaghdour; Chris L Hartl; Carlos Torroja; Kiran V Garimella; Martine Zilversmit; Reed Cartwright; Guy A Rouleau; Mark Daly; Eric A Stone; Matthew E Hurles; Philip Awadalla
Journal:  Nat Genet       Date:  2011-06-12       Impact factor: 38.330

6.  Chromosome-specific accumulation of aneuploidy in the aging mouse brain.

Authors:  Francesca Faggioli; Tao Wang; Jan Vijg; Cristina Montagna
Journal:  Hum Mol Genet       Date:  2012-09-06       Impact factor: 6.150

Review 7.  Telomeres and aging.

Authors:  Geraldine Aubert; Peter M Lansdorp
Journal:  Physiol Rev       Date:  2008-04       Impact factor: 37.312

Review 8.  Are we sure we know how to measure 8-oxo-7,8-dihydroguanine in DNA from human cells?

Authors:  Andrew R Collins; Jean Cadet; Lennart Möller; Henrik E Poulsen; Jose Viña
Journal:  Arch Biochem Biophys       Date:  2004-03-01       Impact factor: 4.013

Review 9.  Rates and fitness consequences of new mutations in humans.

Authors:  Peter D Keightley
Journal:  Genetics       Date:  2012-02       Impact factor: 4.562

10.  Tissue-specific mutation accumulation in human adult stem cells during life.

Authors:  Francis Blokzijl; Joep de Ligt; Myrthe Jager; Valentina Sasselli; Sophie Roerink; Nobuo Sasaki; Meritxell Huch; Sander Boymans; Ewart Kuijk; Pjotr Prins; Isaac J Nijman; Inigo Martincorena; Michal Mokry; Caroline L Wiegerinck; Sabine Middendorp; Toshiro Sato; Gerald Schwank; Edward E S Nieuwenhuis; Monique M A Verstegen; Luc J W van der Laan; Jeroen de Jonge; Jan N M IJzermans; Robert G Vries; Marc van de Wetering; Michael R Stratton; Hans Clevers; Edwin Cuppen; Ruben van Boxtel
Journal:  Nature       Date:  2016-10-03       Impact factor: 49.962

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  16 in total

Review 1.  A high-fidelity method for genomic sequencing of single somatic cells reveals a very high mutational burden.

Authors:  Jan Vijg; Xiao Dong; Lei Zhang
Journal:  Exp Biol Med (Maywood)       Date:  2017-07

Review 2.  A Review of the Potential Effects of Melatonin in Compromised Mitochondrial Redox Activities in Elderly Patients With COVID-19.

Authors:  Wen-Lin Su; Chia-Chao Wu; Shu-Fang Vivienne Wu; Mei-Chen Lee; Min-Tser Liao; Kuo-Cheng Lu; Chien-Lin Lu
Journal:  Front Nutr       Date:  2022-06-20

Review 3.  DNA Damage as a Driver for Growth Delay: Chromosome Instability Syndromes with Intrauterine Growth Retardation.

Authors:  Benilde García-de Teresa; Mariana Hernández-Gómez; Sara Frías
Journal:  Biomed Res Int       Date:  2017-11-12       Impact factor: 3.411

Review 4.  Aging and the rise of somatic cancer-associated mutations in normal tissues.

Authors:  Rosa Ana Risques; Scott R Kennedy
Journal:  PLoS Genet       Date:  2018-01-04       Impact factor: 5.917

Review 5.  Epigenetic Mechanisms Impacting Aging: A Focus on Histone Levels and Telomeres.

Authors:  Shufei Song; F Brad Johnson
Journal:  Genes (Basel)       Date:  2018-04-09       Impact factor: 4.096

Review 6.  Mitochondria in the signaling pathways that control longevity and health span.

Authors:  Mansour Akbari; Thomas B L Kirkwood; Vilhelm A Bohr
Journal:  Ageing Res Rev       Date:  2019-08-12       Impact factor: 10.895

7.  Quantification of somatic mutation flow across individual cell division events by lineage sequencing.

Authors:  Yehuda Brody; Robert J Kimmerling; Yosef E Maruvka; David Benjamin; Joshua J Elacqua; Nicholas J Haradhvala; Jaegil Kim; Kent W Mouw; Kristjana Frangaj; Amnon Koren; Gad Getz; Scott R Manalis; Paul C Blainey
Journal:  Genome Res       Date:  2018-11-20       Impact factor: 9.043

8.  Aging and drug discovery.

Authors:  Daniela Bakula; Alexander M Aliper; Polina Mamoshina; Michael A Petr; Amanuel Teklu; Joseph A Baur; Judith Campisi; Collin Y Ewald; Anastasia Georgievskaya; Vadim N Gladyshev; Olga Kovalchuk; Dudley W Lamming; Martijn S Luijsterburg; Alejandro Martín-Montalvo; Stuart Maudsley; Garik V Mkrtchyan; Alexey Moskalev; S Jay Olshansky; Ivan V Ozerov; Alexander Pickett; Michael Ristow; Alex Zhavoronkov; Morten Scheibye-Knudsen
Journal:  Aging (Albany NY)       Date:  2018-11-13       Impact factor: 5.682

9.  Chromosome Instability, Aging and Brain Diseases.

Authors:  Ivan Y Iourov; Yuri B Yurov; Svetlana G Vorsanova; Sergei I Kutsev
Journal:  Cells       Date:  2021-05-19       Impact factor: 6.600

Review 10.  DNA polymerase β deficiency promotes the occurrence of esophageal precancerous lesions in mice.

Authors:  Jiace Qin; Yanyan Zhu; Yongwei Ding; Tingting Niu; Yangyang Zhang; Huiting Wu; Lili Zhu; Baoyin Yuan; Yan Qiao; Jing Lu; Kangdong Liu; Ziming Dong; Ge Jin; Xinhuan Chen; Jimin Zhao
Journal:  Neoplasia       Date:  2021-06-15       Impact factor: 5.715

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