Literature DB >> 28548837

The Role of the Hydroxyl Group in Propofol-Protein Target Recognition: Insights from ONIOM Studies.

Ling Qiu1,2, Jianguo Lin1, Qingzhu Liu1, Shanshan Wang1, Gaochao Lv1, Ke Li1, Haiming Shi1, Zhengkun Huang1, Edward J Bertaccini2,3.   

Abstract

Propofol (PFL, 1-hydroxyl-2,6-diisopropylbenzene) is currently used widely as one of the most well-known intravenous anesthetics to relieve surgical suffering, but its mechanism of action is not yet clear. Previous experimental studies have demonstrated that the hydroxyl group of PFL plays a dominant role in the molecular recognition of PFL with receptors that lead to hypnosis. To further explore the mechanism of anesthesia induced by PFL in the present work, the exact binding features and interaction details of PFL with three important proteins, human serum albumin (HSA), the pH-gated ion channel from Gloeobacter violaceus (GLIC), and horse spleen apoferritin (HSAF), were investigated systematically by using a rigorous three-layer ONIOM (M06-2X/6-31+G*:PM6:AMBER) method. Additionally, to further characterize the possible importance of such hydroxyl interactions, a similar set of calculations was carried out on the anesthetically inactive fropofol (FFL, 1-fluoro-2,6-diisopropylbenzene) in which the fluorine was substituted for the hydroxyl. According to the ONIOM calculations, atoms in molecules (AIM) analyses, and electrostatic potential (ESP) analyses, the significance of hydrogen bond, halogen bond, and hydrophobic interactions in promoting proper molecular recognition was revealed. The binding interaction energies of PFL with different proteins were generally larger than FFL and are a significant determinant of their differential anesthetic efficacies. Interestingly, although the hydrogen-bonding effect of the hydroxyl moiety was prominent in propofol, the substitution of the 1-hydroxyl by a fluorine atom did not prevent FFL from binding to the protein via a halogen-bonding interaction. It therefore became clear that multiple specific interactions rather than just hydrogen or halogen bonds must be taken into account to explain the different anesthesia endpoints caused by PFL and FFL. The contributions of key residues in ligand-receptor binding were also quantified, and the calculated results agreed with many available experimental observations. This work will provide complementary insights into the molecular mechanisms of anesthetic action for PFL from a robust theoretical point of view. This will not only assist in interpreting experimental observations but will also help to develop working hypotheses for further experiments and future drug design.

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Year:  2017        PMID: 28548837     DOI: 10.1021/acs.jpcb.7b02079

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Alkylphenol inverse agonists of HCN1 gating: H-bond propensity, ring saturation and adduct geometry differentially determine efficacy and potency.

Authors:  Rebecca L Joyce; Nicole P Beyer; Georgia Vasilopoulos; Kellie A Woll; Adam C Hall; Roderic G Eckenhoff; Dipti N Barman; J David Warren; Gareth R Tibbs; Peter A Goldstein
Journal:  Biochem Pharmacol       Date:  2019-02-13       Impact factor: 5.858

2.  Mechanistic basis of propofol-induced disruption of kinesin processivity.

Authors:  Mandira Dutta; Susan P Gilbert; José N Onuchic; Biman Jana
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

3.  Synthesis and Characterization of a Diazirine-Based Photolabel of the Nonanesthetic Fropofol.

Authors:  E Railey White; David M Leace; Victoria M Bedell; Natarajan V Bhanu; Benjamin A Garcia; William P Dailey; Roderic G Eckenhoff
Journal:  ACS Chem Neurosci       Date:  2020-12-23       Impact factor: 4.418

Review 4.  Looking Back, Looking Forward at Halogen Bonding in Drug Discovery.

Authors:  Lois Mendez; Gabriela Henriquez; Suman Sirimulla; Mahesh Narayan
Journal:  Molecules       Date:  2017-08-24       Impact factor: 4.411

5.  Regulation and drug modulation of a voltage-gated sodium channel: Pivotal role of the S4-S5 linker in activation and slow inactivation.

Authors:  Jinglei Xiao; Vasyl Bondarenko; Yali Wang; Antonio Suma; Marta Wells; Qiang Chen; Tommy Tillman; Yan Luo; Buwei Yu; William P Dailey; Roderic Eckenhoff; Pei Tang; Vincenzo Carnevale; Michael L Klein; Yan Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-13       Impact factor: 11.205

  5 in total

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