Literature DB >> 28545836

Symptom severity classification with gradient tree boosting.

Yang Liu1, Yu Gu2, John Chu Nguyen3, Haodan Li4, Jiawei Zhang5, Yuan Gao6, Yang Huang7.   

Abstract

In this paper, we present our system as submitted in the CEGS N-GRID 2016 task 2 RDoC classification competition. The task was to determine symptom severity (0-3) in a domain for a patient based on the text provided in his/her initial psychiatric evaluation. We first preprocessed the psychiatry notes into a semi-structured questionnaire and transformed the short answers into either numerical, binary, or categorical features. We further trained weak Support Vector Regressors (SVR) for each verbose answer and combined regressors' output with other features to feed into the final gradient tree boosting classifier with resampling of individual notes. Our best submission achieved a macro-averaged Mean Absolute Error of 0.439, which translates to a normalized score of 81.75%.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bootstrap; Gradient tree boosting; NLP; Psychiatric evaluation; Severity prediction; Text classification

Mesh:

Year:  2017        PMID: 28545836      PMCID: PMC5699971          DOI: 10.1016/j.jbi.2017.05.015

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  4 in total

1.  The effect of feature representation on MEDLINE document classification.

Authors:  Meliha Yetisgen-Yildiz; Wanda Pratt
Journal:  AMIA Annu Symp Proc       Date:  2005

2.  Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model.

Authors:  R H Perlis; D V Iosifescu; V M Castro; S N Murphy; V S Gainer; J Minnier; T Cai; S Goryachev; Q Zeng; P J Gallagher; M Fava; J B Weilburg; S E Churchill; I S Kohane; J W Smoller
Journal:  Psychol Med       Date:  2011-06-20       Impact factor: 7.723

Review 3.  Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2.

Authors:  Michele Filannino; Amber Stubbs; Özlem Uzuner
Journal:  J Biomed Inform       Date:  2017-04-25       Impact factor: 6.317

4.  Modeling disease severity in multiple sclerosis using electronic health records.

Authors:  Zongqi Xia; Elizabeth Secor; Lori B Chibnik; Riley M Bove; Suchun Cheng; Tanuja Chitnis; Andrew Cagan; Vivian S Gainer; Pei J Chen; Katherine P Liao; Stanley Y Shaw; Ashwin N Ananthakrishnan; Peter Szolovits; Howard L Weiner; Elizabeth W Karlson; Shawn N Murphy; Guergana K Savova; Tianxi Cai; Susanne E Churchill; Robert M Plenge; Isaac S Kohane; Philip L De Jager
Journal:  PLoS One       Date:  2013-11-11       Impact factor: 3.240

  4 in total
  4 in total

1.  A natural language processing challenge for clinical records: Research Domains Criteria (RDoC) for psychiatry.

Authors:  Özlem Uzuner; Amber Stubbs; Michele Filannino
Journal:  J Biomed Inform       Date:  2017-10-16       Impact factor: 6.317

Review 2.  Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2.

Authors:  Michele Filannino; Amber Stubbs; Özlem Uzuner
Journal:  J Biomed Inform       Date:  2017-04-25       Impact factor: 6.317

3.  Computer-aided diagnosis of lung nodule using gradient tree boosting and Bayesian optimization.

Authors:  Mizuho Nishio; Mitsuo Nishizawa; Osamu Sugiyama; Ryosuke Kojima; Masahiro Yakami; Tomohiro Kuroda; Kaori Togashi
Journal:  PLoS One       Date:  2018-04-19       Impact factor: 3.240

4.  Evolutionary sequential genetic search technique-based cancer classification using fuzzy rough nearest neighbour classifier.

Authors:  Loganathan Meenachi; Srinivasan Ramakrishnan
Journal:  Healthc Technol Lett       Date:  2018-08-15
  4 in total

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