Literature DB >> 28540684

Next-Generation Sequencing for MicroRNA Expression Profile.

Yue Hu1, Wenjun Lan2, Daniel Miller3.   

Abstract

Sequencing technologies have made considerable advancements. From the Sanger sequencing method to the next-generation sequencing (NGS) methods, and from the NGS methods to the third-generation sequencing methods, we can see the development thread of the sequencing technology. Currently, NGS is the main contender in the sequencing market. NGS technologies provide an opportunity to research the microRNA (miRNA) expression profiles in detail. The NGS platforms have their own special characteristics, but share some main ideas. DNA sequencing via NGS is fundamental for RNA sequencing and miRNA sequencing. MiRNA sequencing has special characteristics. The pipeline of miRNA sequencing by NGS is explained in detail from the wet experiment to the dry experiment.

Keywords:  454; Illumina; Ion Torrent; MicroRNA expression profile; Next-generation sequencing; SOLiD

Mesh:

Substances:

Year:  2017        PMID: 28540684     DOI: 10.1007/978-1-4939-7046-9_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Systemic Analysis of miRNAs in PD Stress Condition: miR-5701 Modulates Mitochondrial-Lysosomal Cross Talk to Regulate Neuronal Death.

Authors:  Paresh Prajapati; Lakshmi Sripada; Kritarth Singh; Milton Roy; Khyati Bhatelia; Pooja Dalwadi; Rajesh Singh
Journal:  Mol Neurobiol       Date:  2017-07-14       Impact factor: 5.590

2.  Long transcripts minus touchdown qPCR (LTMT-qPCR): a simplified and convenient method for the screening and quantification of microRNA profiles.

Authors:  Xi Wang; Yixiao Feng; Shixian Zhou; Xiaorong Yang; Yan Liu; Qi Peng; Xuehua Kong; Lan Zhou; Zongyue Zeng
Journal:  Lab Invest       Date:  2021-08-10       Impact factor: 5.662

3.  MicroRNA Expression Profiling, Target Identification, and Validation in Chondrocytes.

Authors:  Tomoki Chiba; Ryota Kurimoto; Takahide Matsushima; Yoshiaki Ito; Ryo Nakamichi; Martin Lotz; Hiroshi Asahara
Journal:  Methods Mol Biol       Date:  2021

4.  Identification and Validation of miRNA-TF-mRNA Regulatory Networks in Uterine Fibroids.

Authors:  Xiaotong Peng; Yanqun Mo; Junliang Liu; Huining Liu; Shuo Wang
Journal:  Front Bioeng Biotechnol       Date:  2022-03-22

5.  Leishmania donovani infection induce differential miRNA expression in CD4+ T cells.

Authors:  Vinod Kumar; Sushmita Das; Ajay Kumar; Neeraj Tiwari; Ashish Kumar; Kumar Abhishek; Abhishek Mandal; Manjay Kumar; Taj Shafi; Tanvir Bamra; Rakesh Kumar Singh; Saravanan Vijayakumar; Abhik Sen; Pradeep Das
Journal:  Sci Rep       Date:  2020-02-26       Impact factor: 4.379

6.  The Impact of microRNA Regulation on Immune Recovery in HIV-1-Infected Patients Treated during Acute Infection: A Pilot Study.

Authors:  Yuping Fu; Yan Liu; Zhiying Liu; Lifeng Liu; Lin Yuan; Xizhao An; Jufeng Sun; Tong Zhang; Hao Wu; Shi Lian; Bin Su
Journal:  Biomed Res Int       Date:  2020-12-03       Impact factor: 3.411

7.  Computational methods for the ab initio identification of novel microRNA in plants: a systematic review.

Authors:  Buwani Manuweera; Gillian Reynolds; Indika Kahanda
Journal:  PeerJ Comput Sci       Date:  2019-11-11

Review 8.  MicroRNA Involvement in Signaling Pathways During Viral Infection.

Authors:  Madalina Gabriela Barbu; Carmen Elena Condrat; Dana Claudia Thompson; Oana Larisa Bugnar; Dragos Cretoiu; Oana Daniela Toader; Nicolae Suciu; Silviu Cristian Voinea
Journal:  Front Cell Dev Biol       Date:  2020-03-10

Review 9.  The Role of Exo-miRNAs in Cancer: A Focus on Therapeutic and Diagnostic Applications.

Authors:  Francesco Ingenito; Giuseppina Roscigno; Alessandra Affinito; Silvia Nuzzo; Iolanda Scognamiglio; Cristina Quintavalle; Gerolama Condorelli
Journal:  Int J Mol Sci       Date:  2019-09-21       Impact factor: 5.923

Review 10.  miRNA Regulatory Functions in Farm Animal Diseases, and Biomarker Potentials for Effective Therapies.

Authors:  Duy N Do; Pier-Luc Dudemaine; Manisha Mathur; Prashanth Suravajhala; Xin Zhao; Eveline M Ibeagha-Awemu
Journal:  Int J Mol Sci       Date:  2021-03-17       Impact factor: 5.923

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