Literature DB >> 28533401

Evolutionary steps involving counterion displacement in a tunicate opsin.

Keiichi Kojima1, Takahiro Yamashita1, Yasushi Imamoto1, Takehiro G Kusakabe2, Motoyuki Tsuda3, Yoshinori Shichida4,5.   

Abstract

Ci-opsin1 is a visible light-sensitive opsin present in the larval ocellus of an ascidian, Ciona intestinalis This invertebrate opsin belongs to the vertebrate visual and nonvisual opsin groups in the opsin phylogenetic tree. Ci-opsin1 contains candidate counterions (glutamic acid residues) at positions 113 and 181; the former is a newly acquired position in the vertebrate visual opsin lineage, whereas the latter is an ancestral position widely conserved among invertebrate opsins. Here, we show that Glu113 and Glu181 in Ci-opsin1 act synergistically as counterions, which imparts molecular properties to Ci-opsin1 intermediate between those of vertebrate- and invertebrate-type opsins. Synergy between the counterions in Ci-opsin1 was demonstrated by E113Q and E181Q mutants that exhibit a pH-dependent spectral shift, whereas only the E113Q mutation in vertebrate rhodopsin yields this spectral shift. On absorbing light, Ci-opsin1 forms an equilibrium between two intermediates with protonated and deprotonated Schiff bases, namely the MI-like and MII-like intermediates, respectively. Adding G protein caused the equilibrium to shift toward the MI-like intermediate, indicating that Ci-opsin1 has a protonated Schiff base in its active state, like invertebrate-type opsins. Ci-opsin1's G protein activation efficiency is between the efficiencies of vertebrate- and invertebrate-type opsins. Interestingly, the E113Y and E181S mutations change the molecular properties of Ci-opsin1 into those resembling invertebrate-type or bistable opsins and vertebrate ancient/vertebrate ancient-long or monostable opsins, respectively. These results strongly suggest that acquisition of counterion Glu113 changed the molecular properties of visual opsin in a vertebrate/tunicate common ancestor as a crucial step in the evolution of vertebrate visual opsins.

Entities:  

Keywords:  G protein-coupled receptors; ascidian; counterion; molecular evolution; opsin

Mesh:

Substances:

Year:  2017        PMID: 28533401      PMCID: PMC5468630          DOI: 10.1073/pnas.1701088114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  A rhodopsin exhibiting binding ability to agonist all-trans-retinal.

Authors:  Hisao Tsukamoto; Akihisa Terakita; Yoshinori Shichida
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-25       Impact factor: 11.205

Review 2.  Evolution of phototransduction, vertebrate photoreceptors and retina.

Authors:  Trevor D Lamb
Journal:  Prog Retin Eye Res       Date:  2013-06-19       Impact factor: 21.198

3.  pH dependence of photolysis intermediates in the photoactivation of rhodopsin mutant E113Q.

Authors:  J W Lewis; I Szundi; W Y Fu; T P Sakmar; D S Kliger
Journal:  Biochemistry       Date:  2000-01-25       Impact factor: 3.162

4.  The role of the retinylidene Schiff base counterion in rhodopsin in determining wavelength absorbance and Schiff base pKa.

Authors:  T P Sakmar; R R Franke; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

5.  Central nervous system-specific expression of G protein alpha subunits in the ascidian Ciona intestinalis.

Authors:  Reiko Yoshida; Takehiro Kusakabe; Megumi Kamatani; Motonari Daitoh; Motoyuki Tsuda
Journal:  Zoolog Sci       Date:  2002-10       Impact factor: 0.931

Review 6.  Phototransduction motifs and variations.

Authors:  King-Wai Yau; Roger C Hardie
Journal:  Cell       Date:  2009-10-16       Impact factor: 41.582

7.  Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin.

Authors:  J Nathans
Journal:  Biochemistry       Date:  1990-10-16       Impact factor: 3.162

8.  Gq-coupled rhodopsin subfamily composed of invertebrate visual pigment and melanopsin.

Authors:  Mitsumasa Koyanagi; Akihisa Terakita
Journal:  Photochem Photobiol       Date:  2008-05-29       Impact factor: 3.421

9.  Rod visual pigment optimizes active state to achieve efficient G protein activation as compared with cone visual pigments.

Authors:  Keiichi Kojima; Yasushi Imamoto; Ryo Maeda; Takahiro Yamashita; Yoshinori Shichida
Journal:  J Biol Chem       Date:  2013-12-27       Impact factor: 5.157

10.  Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment.

Authors:  Keita Sato; Takahiro Yamashita; Yasushi Imamoto; Yoshinori Shichida
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

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  10 in total

1.  Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization.

Authors:  Masuzu Kikuchi; Keiichi Kojima; Shin Nakao; Susumu Yoshizawa; Shiho Kawanishi; Atsushi Shibukawa; Takashi Kikukawa; Yuki Sudo
Journal:  Sci Rep       Date:  2021-07-20       Impact factor: 4.379

2.  Convergent evolution of tertiary structure in rhodopsin visual proteins from vertebrates and box jellyfish.

Authors:  Elliot Gerrard; Eshita Mutt; Takashi Nagata; Mitsumasa Koyanagi; Tilman Flock; Elena Lesca; Gebhard F X Schertler; Akihisa Terakita; Xavier Deupi; Robert J Lucas
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-23       Impact factor: 11.205

3.  The Two-Photon Reversible Reaction of the Bistable Jumping Spider Rhodopsin-1.

Authors:  David Ehrenberg; Niranjan Varma; Xavier Deupi; Mitsumasa Koyanagi; Akihisa Terakita; Gebhard F X Schertler; Joachim Heberle; Elena Lesca
Journal:  Biophys J       Date:  2019-03-05       Impact factor: 4.033

4.  The counterion-retinylidene Schiff base interaction of an invertebrate rhodopsin rearranges upon light activation.

Authors:  Takashi Nagata; Mitsumasa Koyanagi; Hisao Tsukamoto; Eshita Mutt; Gebhard F X Schertler; Xavier Deupi; Akihisa Terakita
Journal:  Commun Biol       Date:  2019-05-13

5.  Lokiarchaeota archaeon schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift.

Authors:  Keiichi Kojima; Susumu Yoshizawa; Masumi Hasegawa; Masaki Nakama; Marie Kurihara; Takashi Kikukawa; Yuki Sudo
Journal:  Sci Rep       Date:  2020-11-30       Impact factor: 4.379

Review 6.  Pathways and disease-causing alterations in visual chromophore production for vertebrate vision.

Authors:  Philip D Kiser; Krzysztof Palczewski
Journal:  J Biol Chem       Date:  2020-11-23       Impact factor: 5.157

7.  Onecut Regulates Core Components of the Molecular Machinery for Neurotransmission in Photoreceptor Differentiation.

Authors:  Quirino Attilio Vassalli; Chiara Colantuono; Valeria Nittoli; Anna Ferraioli; Giulia Fasano; Federica Berruto; Maria Luisa Chiusano; Robert Neil Kelsh; Paolo Sordino; Annamaria Locascio
Journal:  Front Cell Dev Biol       Date:  2021-03-18

8.  Sea urchin larvae utilize light for regulating the pyloric opening.

Authors:  Junko Yaguchi; Shunsuke Yaguchi
Journal:  BMC Biol       Date:  2021-04-06       Impact factor: 7.431

9.  Proton transfer pathway in anion channelrhodopsin-1.

Authors:  Masaki Tsujimura; Keiichi Kojima; Shiho Kawanishi; Yuki Sudo; Hiroshi Ishikita
Journal:  Elife       Date:  2021-12-21       Impact factor: 8.140

10.  Mutational analysis of the conserved carboxylates of anion channelrhodopsin-2 (ACR2) expressed in Escherichia coli and their roles in anion transport.

Authors:  Keiichi Kojima; Hiroshi C Watanabe; Satoko Doi; Natsuki Miyoshi; Misaki Kato; Hiroshi Ishikita; Yuki Sudo
Journal:  Biophys Physicobiol       Date:  2018-09-07
  10 in total

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