| Literature DB >> 28531320 |
Thomas J Littlejohns1, Cathie Sudlow2, Naomi E Allen1, Rory Collins1.
Abstract
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Year: 2019 PMID: 28531320 PMCID: PMC6451771 DOI: 10.1093/eurheartj/ehx254
Source DB: PubMed Journal: Eur Heart J ISSN: 0195-668X Impact factor: 29.983
Figure 1Absolute risk of ischaemic heart disease mortality by usual systolic blood pressure and age at risk in 5000, 50 000, and 500 000 participants. Unpublished figure containing data from the Prospective Studies Collaboration, obtained through personal communication. CI, confidence interval; IHD, ischaemic heart disease.
Characteristics of major population-based prospective cohort studies with biological samples for 100 000 or more participants
| Study | Initial scientific focus | Study details | Physical measures | Repeat assessment | Samples | Genotyping | Imaging | Follow-up health-record linkage |
|---|---|---|---|---|---|---|---|---|
| China Kadoorie Biobank | To explore the interplay between lifestyle, environmental and genetic factors and the risk of chronic diseases | 510 000 men and women aged 30–79 recruited from 10 regions in China (5 urban, 5 rural) between 2004–08 | Yes | In subsets of 25 000 every few years | Blood sample; Urine sample for 25 000 participants at second repeat assessment | Candidate array (384 SNPs) and GWAS array (800 000 SNPs) on ∼100 000 participants | cIMT, bone mineral density and ECG on 25 000 participants at second repeat assessment | Mortality registry; stroke, IHD, cancer, and diabetes registries; hospital admissions |
| European Prospective Investigation into Cancer and Nutrition (EPIC) | To investigate dietary, lifestyle and environmental factors in relation to cancer and chronic disease incidence | 520 000 men and women mostly aged 35–70 recruited in 23 centres in 10 European countries between 1992–99 | Types of measures varied by centres | Recontact every 3–5 years for lifestyle factors | Blood samples for 385 000 participants | Available for nested case-control subsets | No | Cancer registry in seven countries; combination of health insurance records cancer and pathology registries, and by active follow-up through participants and next-of- kin in three countries; Mortality registries or active follow-up and death-record collection; hospital admission data available in some countries |
| Lifelines | To investigate interactions between environmental, phenotypic and genetic factors in the development of chronic disease and healthy ageing | 167 000 adults and children (aged 6+) recruited from 3 provinces in the Netherlands between 2006–13 | Yes | Plans to invite all participants every 5 years | Blood and urine | GWAS array (270 000 SNPs) on 15 000 participants | No | Planned linkages to GP and hospital admission records |
| Million Veteran Program | A national representative and longitudinal study for genomic (and non-genomic) research | Recruitment began in 2011 and is ongoing. (As of August 2015, 397 000 men and women mostly aged ≥50 years recruited across the USA) | No | No | Blood samples | GWAS array (675 000 SNPs) on 199 000 participants (ongoing) | No | Electronic health records |
| Kaiser Permanente Research Bank | Developed to facilitate research on genetic and environmental factors on common diseases and healthy aging | Recruitment began in 2007 with the aim of recruiting 500 000 men and women aged ≥18 from the Northern California region in the USA | No | No | Blood and saliva samples | GWAS array (675 000 SNPs) | No | Hospitalizations Clinic visits Laboratory testing results Pharmacy Dispensing Records |
cIMT, carotid intima-media thickness test; ECG, electrocardiogram; GWAS, genome-wide association study; IHD, ischaemic heart disease; NHS, National Health Service; SNP, single nucleotide polymorphism.
Cohort-wide coverage unless otherwise stated.
Overview of data collected at baseline assessment in 2006–10
| Topics/measures | Details |
|---|---|
| Touchscreen questionnaire and computer assisted verbal interview | |
| Sociodemographics | Ethnicity, education, employment, household information, Townsend deprivation index (social class) |
| Lifestyle and environment | Smoking, alcohol consumption, physical activity, diet, sleep, electronic device use, sun exposure, and sexual factors |
| Early life factors | Birthplace, birth weight, breastfed, childhood body size and height, maternal smoking, handedness, adopted, and part of multiple birth |
| Family history | Illnesses of father/mother/siblings, age of parents, age parents died, and number of siblings |
| Psychosocial factors | Social support, bipolar/major depression, anxiety, nerves, psychological traits, and mood |
| Health and medical history | Medical conditions, medications, operations, cancer screening, pain, oral health, eyesight, hearing, and general health |
| Sex-specific factors | Male specific—first facial hair, age voice broke, hair/balding pattern, children fathered; female specific—hormone-replacement therapy, contraception, pregnancy, menstruation, menopause, and cervical test |
| Cognitive function | Prospective memory |
| Hearing test | Speech-in-noise |
| Physical measures | |
| Blood pressure and pulse rate | Two measures taken 1 min apart using a digital blood pressure monitor |
| Arterial stiffness | Pulse wave velocity using infra-red sensor at the finger |
| Grip strength | Right and left hand isometric grip strength |
| Anthropometrics | Standing/sitting height, waist/hip circumference, weight body mass index, and whole body bio-impedance measures |
| Spirometry | Two to three blows within a 6 min period |
| Bone mineral density | Ultrasound measurement of the heel |
| Eye measures | Eye surgery complications, visual acuity, autorefraction, intraocular pressure, and retinal coherence tomography |
| Fitness test | Heart rate monitoring using a four-lead electrocardiograph during cycle ergometry on a stationary bike |
| Sample collection | |
| Blood | 45 mL divided into 6 tubes, includes whole blood, serum, plasma, red cells, buffy coat |
| Urine | 9 mL in 1 tube |
| Saliva | 2.5 mL in 1 tube |
Performed in last 200 000 participants.
Performed in 50 000 participants (as part of the pilot study).
Performed in last 100–150 000 participants.
Overview of ongoing data collection and enhanced phenotyping
| Data | Details | Date collected | Date available for research use |
|---|---|---|---|
| Genotyping | Blood collected at baseline for the full cohort has been genotyped by two arrays that share 95% common content (the UK BiLEVE array for 50 000 participants and the UK Biobank Axiom array for 450 000 participants). The array covers ∼800 000 SNPs and indel markers covering markers of specific interest, rare coding variants and genome-wide coverage. Seventy-three million SNPs, short indels, and large structural variants have been imputed using the UK10K haplotype reference panel merged with the 1000 Genomes Phase 3 reference panel. For more detail, see: | Samples collected in 2006–10 | 150 000 in Q4 2015; 350 000 in Q2 2017 |
| Biochemical measures | Thirty-four biomarkers are being assayed using the plasma, serum, red blood cells, and urine samples. Biomarkers were selected because they are established risk factors for disease (e.g. sex hormones for cancer), diagnostic measures (e.g. HbA1C for diabetes) or they are used to characterize phenotypes (e.g. cystatin C and creatinine for renal function). For more detail, see: | Samples collected in 2006–10 | Urinary biomarkers in Q4 2016; Red blood cells and serum biomarkers in Q3–Q4 2017 |
| Repeat of baseline assessment | Twenty-thousand participants repeated all baseline assessment measures at one assessment centre, Stockport, UK. These will be repeated every few years. | 2012–13 | Q3 2013 |
| Web-based questionnaires | Participants with email addresses (∼330 000) are sent web-based questionnaires once or twice a year to collect more detailed information on exposures or health outcomes that are difficult to capture through linkage to electronic health records. | ||
| 24-h dietary recall | Includes information on consumption of over 200 food and drink items over the last 24 h and was used to generate estimated daily nutrient intakes. The questionnaire was sent on four occasions over a 16-month period to capture variation in diet. 176 012 participants completed the questionnaire at least once (53% response rate) and 27 535 completed it four times (16%). | 2011–12 | Q2 2013 |
| Cognitive function | Includes a series of cognitive tests, of which four were repeated from the baseline assessment (fluid intelligence, reaction time, numeric memory, pairs test) in addition to two further tests (trail making, symbol digit substitution). 120 000 participants completed this questionnaire (36% response rate). | 2014 | 2015 |
| Occupational history | Included information on lifetime employment history, occupational exposures and related medical information. 117 500 participants completed this questionnaire (35% response rate). | 2015–16 | 2015 |
| Mental health | Included information on lifetime mental health events (including depression, bipolar affective disorder, and generalized anxiety disorder), alcohol and cannabis use, unusual and psychotic experiences, traumatic events, self-harm behaviours and subjective wellbeing. 137 400 participants completed this questionnaire (45% response rate). | 2016 | Q2 2017 |
| Accelerometry | 100 000 participants wore an Axivity AX3 tri-axial wrist accelerometer for a 7-day period. Derived summary data on duration and intensity of activity available. | 2013–15 | 2015 |
| Multi-modal imaging | MRI of brain, heart and body, carotid ultrasound and whole body DXA scan of bones and joints for 100 000 participants. | Pilot phase: 2014–15; Main phase: 2015–20 | 2015—ongoing |
DXA, Dual-energy X-ray absorptiometry; MRI, magnetic resonance imaging; SNP, single nucleotide polymorphism.
Figure 2Overview of the genetic markers measured on the UK Biobank Axiom Array. ADME, absorption, distribution, metabolism, and excretion; ApoE, apolipoprotein E; CNV, copy number variants; eQTL, expression quantitative trait loci; GWAS, genome-wide association study; HLA, human leucocyte antigen; k, thousand; KIR, killer cell immunoglobulin-like receptors; MAF, minor allele frequency; mtDNA, mitochondrial DNA; NHGRI, National Human Genome Research Institute.
Figure 3Plane selection for measures of distensibility and pulse wave velocity in ascending, proximal, descending, and distal descending aorta obtained from cardiac magnetic resonance imaging (measured at the Oxford Centre for Clinical Magnetic Resonance Research).
Overview of linkage to health-related records
| Data | Details | Date of coverage |
|---|---|---|
| Death | ICD-10 coded national death registry data obtained from the Health and Social Care Information Centre (now NHS Digital) for England and Wales and the Information Services Department (ISD) for Scotland. Contains information on source of death report, date, age and cause(s) of death | 2006—ongoing |
| Cancer | ICD-9 and -10 coded national cancer registry data obtained from HSCIC for England and Wales and the ISD for Scotland. Contains information on source of cancer report, date and age at diagnosis, site, histology, and behaviour of the cancer. Detailed data on stage and grade of tumours will be made available in Q3–Q4 2017 | England and Wales: 1995—ongoing Scotland: 1957—ongoing |
| Inpatient hospital admissions | ICD-9 and -10 coded hospital inpatient episodes obtained from the Hospital Episode Statistics provider for England, the Patient Episode Data for Wales and the Scottish Morbidity Records for Scotland. Contains information on admission and discharge, operations, diagnoses, maternity care, and psychiatric care. Main and secondary diagnoses/operations as well as date of diagnosis/operation are included. | England: 1996—ongoing Wales: 1998—ongoing Scotland: 1997—ongoing |
| Primary Care | Coded data from primary care records, including diagnoses, prescriptions, referrals etc. will be made available 2017–18 | Lifetime—ongoing |
| Other | Efforts are ongoing to link to additional external datasets including hospital outpatient admissions, screening programmes, and disease-specific registries and others. | Not applicable |
The authors do hereby declare that all illustrations and figures in the manuscript are entirely original and do not require reprint permission.