| Literature DB >> 28529783 |
Ernlie A Publicover1, Jennifer Kolwich1, Darcie L Stack1, Alyssa J Doué1, Kai E O Ylijoki1.
Abstract
The title hydrated mol-ecular salt, C4H12N+·C4H5O6-·H2O, was prepared by deprotonation of enanti-opure l-tartaric acid with racemic sec-butyl-amine in water. Only one enanti-omer was observed crystallographically, resulting from the combination of (S)-sec-butyl-amine with l-tartaric acid. The sec-butyl-ammonium moiety is disordered over two conformations related by rotation around the CH-CH2 bond; the refined occupancy ratio is 0.68 (1):0.32 (1). In the crystal, mol-ecules are linked through a network of O-H⋯O and N-H⋯O hydrogen-bonding inter-actions, between the ammonium H atoms, the tartrate hy-droxy H atoms, and the inter-stitial water, forming a three-dimensional supra-molecular structure.Entities:
Keywords: chiral resolution; crystal structure; hydrogen bonding; l-tartaric acid; monohydrate; sec-butylamine
Year: 2017 PMID: 28529783 PMCID: PMC5418791 DOI: 10.1107/S2056989017005448
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title hydrated molecular salt, showing (a) the major and (b) the minor components of the disordered sec-butylammonium moiety. Displacement ellipsoids are drawn at the 50% probability level. Red lines indicate the hydrogen bonds present within the asymmetric unit (see Table 1 ▸).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O12—H12⋯O11 | 0.90 (3) | 2.00 (3) | 2.602 (2) | 123 (3) |
| O13—H13⋯O16 | 0.85 (3) | 1.83 (3) | 2.662 (2) | 167 (3) |
| O14—H14⋯O10i | 0.93 (4) | 1.58 (5) | 2.499 (2) | 171 (5) |
| O16—H16 | 0.87 (4) | 1.93 (4) | 2.791 (2) | 169 (4) |
| O16—H16 | 0.83 (4) | 2.01 (3) | 2.822 (2) | 167 (3) |
| N9—H9 | 0.93 (2) | 1.89 (2) | 2.803 (9) | 167 (4) |
| N9—H9 | 0.91 (2) | 1.97 (3) | 2.869 (11) | 169 (4) |
| N9—H9 | 0.92 (2) | 2.16 (4) | 2.922 (13) | 140 (5) |
| N9—H9 | 0.92 (2) | 2.20 (4) | 3.001 (12) | 145 (5) |
| N9 | 0.91 (3) | 1.87 (4) | 2.76 (2) | 164 (8) |
| N9 | 0.90 (3) | 1.96 (6) | 2.79 (3) | 151 (9) |
| N9 | 0.90 (3) | 2.21 (8) | 2.83 (3) | 126 (6) |
| N9 | 0.91 (3) | 1.99 (5) | 2.81 (3) | 150 (7) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2A view of the crystal packing of the title hydrated molecular salt, viewed along the c axis (major component of the disorder only). Red dashed lines indicate the intermolecular hydrogen-bonding network (see Table 1 ▸). Displacement ellipsoids are drawn at the 50% probability level.
Experimental details
| Crystal data | |
| Chemical formula | C4H12N+·C4H5O6 −·H2O |
|
| 241.24 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 125 |
|
| 11.0921 (10), 14.8876 (14), 7.2070 (7) |
|
| 1190.13 (19) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.12 |
| Crystal size (mm) | 0.21 × 0.09 × 0.04 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.567, 0.746 |
| No. of measured, independent and observed [ | 9652, 2925, 2613 |
|
| 0.067 |
| (sin θ/λ)max (Å−1) | 0.680 |
| Refinement | |
|
| 0.040, 0.104, 1.03 |
| No. of reflections | 2925 |
| No. of parameters | 236 |
| No. of restraints | 20 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.27 |
Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), DIAMOND (Crystal Impact, 2014 ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C4H12N+·C4H5O6−·H2O | |
| Mo | |
| Orthorhombic, | Cell parameters from 5745 reflections |
| θ = 2.3–28.6° | |
| µ = 0.12 mm−1 | |
| Needle, clear light colourless | |
| 0.21 × 0.09 × 0.04 mm | |
| Bruker APEXII CCD diffractometer | 2613 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.9°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Bruker, 2008) | |
| 9652 measured reflections | |
| 2925 independent reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2925 reflections | (Δ/σ)max < 0.001 |
| 236 parameters | Δρmax = 0.30 e Å−3 |
| 20 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| O10 | 0.78822 (15) | 0.45123 (9) | 0.6188 (2) | 0.0219 (3) | |
| O11 | 0.72627 (15) | 0.30780 (10) | 0.6134 (2) | 0.0250 (4) | |
| O12 | 0.72284 (14) | 0.29621 (10) | 0.2532 (2) | 0.0225 (3) | |
| H12 | 0.702 (3) | 0.264 (2) | 0.353 (4) | 0.047 (9)* | |
| O13 | 0.97215 (14) | 0.34543 (11) | 0.3063 (2) | 0.0232 (4) | |
| H13 | 1.001 (3) | 0.358 (2) | 0.412 (4) | 0.041 (9)* | |
| O14 | 0.78763 (14) | 0.44450 (10) | −0.0347 (2) | 0.0212 (3) | |
| H14 | 0.792 (4) | 0.442 (3) | −0.163 (6) | 0.092 (15)* | |
| O15 | 0.96848 (16) | 0.37910 (14) | −0.0496 (3) | 0.0382 (5) | |
| C5 | 0.75823 (18) | 0.37845 (14) | 0.5374 (3) | 0.0177 (4) | |
| C6 | 0.75836 (18) | 0.38090 (14) | 0.3251 (3) | 0.0181 (4) | |
| H6 | 0.698877 | 0.427117 | 0.283210 | 0.022* | |
| C7 | 0.88300 (18) | 0.40657 (13) | 0.2505 (3) | 0.0184 (4) | |
| H7 | 0.904588 | 0.467567 | 0.298169 | 0.022* | |
| C8 | 0.88361 (19) | 0.40887 (13) | 0.0376 (3) | 0.0189 (4) | |
| O16 | 1.09484 (15) | 0.38045 (11) | 0.6154 (2) | 0.0239 (4) | |
| H16A | 1.048 (3) | 0.383 (3) | 0.713 (6) | 0.057 (11)* | |
| H16B | 1.139 (3) | 0.425 (2) | 0.614 (5) | 0.049 (10)* | |
| C1 | 0.4453 (5) | 0.3844 (4) | 0.7178 (9) | 0.0343 (12) | 0.683 (8) |
| H1A | 0.409648 | 0.328062 | 0.673732 | 0.052* | 0.683 (8) |
| H1B | 0.513909 | 0.400409 | 0.638753 | 0.052* | 0.683 (8) |
| H1C | 0.384759 | 0.432249 | 0.712719 | 0.052* | 0.683 (8) |
| C2 | 0.4888 (4) | 0.3725 (4) | 0.9196 (8) | 0.0251 (11) | 0.683 (8) |
| H2 | 0.532125 | 0.428349 | 0.957990 | 0.030* | 0.683 (8) |
| C3 | 0.3852 (3) | 0.3571 (3) | 1.0525 (6) | 0.0325 (11) | 0.683 (8) |
| H3A | 0.323796 | 0.404227 | 1.031552 | 0.039* | 0.683 (8) |
| H3B | 0.347576 | 0.298478 | 1.023235 | 0.039* | 0.683 (8) |
| C4 | 0.4201 (4) | 0.3577 (3) | 1.2555 (6) | 0.0386 (12) | 0.683 (8) |
| H4A | 0.469675 | 0.304846 | 1.282853 | 0.058* | 0.683 (8) |
| H4B | 0.347090 | 0.356292 | 1.332028 | 0.058* | 0.683 (8) |
| H4C | 0.466033 | 0.412306 | 1.282961 | 0.058* | 0.683 (8) |
| N9 | 0.5762 (8) | 0.2958 (8) | 0.9253 (15) | 0.0176 (14) | 0.683 (8) |
| H9C | 0.544 (7) | 0.240 (3) | 0.909 (7) | 0.07 (2)* | 0.683 (8) |
| H9A | 0.634 (3) | 0.305 (3) | 0.834 (5) | 0.015 (11)* | 0.683 (8) |
| H9B | 0.615 (4) | 0.300 (3) | 1.037 (4) | 0.030 (12)* | 0.683 (8) |
| C1A | 0.4346 (13) | 0.3806 (9) | 0.8007 (19) | 0.040 (3) | 0.317 (8) |
| H1AA | 0.387949 | 0.331055 | 0.747348 | 0.060* | 0.317 (8) |
| H1AB | 0.494591 | 0.401206 | 0.710339 | 0.060* | 0.317 (8) |
| H1AC | 0.380246 | 0.430337 | 0.831645 | 0.060* | 0.317 (8) |
| C2A | 0.4980 (13) | 0.3487 (9) | 0.9750 (18) | 0.034 (3) | 0.317 (8) |
| H2A | 0.544271 | 0.400926 | 1.025413 | 0.041* | 0.317 (8) |
| C3A | 0.4163 (8) | 0.3153 (6) | 1.1293 (12) | 0.033 (2) | 0.317 (8) |
| H3AA | 0.365209 | 0.266424 | 1.079528 | 0.039* | 0.317 (8) |
| H3AB | 0.467213 | 0.289296 | 1.228555 | 0.039* | 0.317 (8) |
| C4A | 0.3352 (11) | 0.3859 (7) | 1.2147 (17) | 0.058 (4) | 0.317 (8) |
| H4AA | 0.281880 | 0.410607 | 1.118991 | 0.088* | 0.317 (8) |
| H4AB | 0.384600 | 0.434191 | 1.267114 | 0.088* | 0.317 (8) |
| H4AC | 0.286538 | 0.358557 | 1.313144 | 0.088* | 0.317 (8) |
| N9A | 0.588 (2) | 0.2777 (18) | 0.925 (4) | 0.022 (4) | 0.317 (8) |
| H9AA | 0.645 (7) | 0.290 (8) | 0.837 (10) | 0.027* | 0.317 (8) |
| H9AB | 0.535 (8) | 0.236 (6) | 0.885 (12) | 0.027* | 0.317 (8) |
| H9AC | 0.623 (7) | 0.263 (6) | 1.034 (7) | 0.027* | 0.317 (8) |
| O10 | 0.0275 (8) | 0.0241 (7) | 0.0140 (7) | 0.0008 (6) | 0.0003 (6) | −0.0008 (6) |
| O11 | 0.0334 (9) | 0.0258 (7) | 0.0157 (7) | −0.0013 (7) | 0.0032 (7) | 0.0015 (6) |
| O12 | 0.0247 (8) | 0.0274 (7) | 0.0153 (7) | −0.0058 (6) | −0.0008 (6) | −0.0013 (6) |
| O13 | 0.0196 (8) | 0.0349 (9) | 0.0150 (7) | 0.0060 (6) | −0.0035 (6) | −0.0035 (6) |
| O14 | 0.0217 (8) | 0.0293 (7) | 0.0127 (7) | 0.0025 (6) | 0.0002 (6) | 0.0004 (6) |
| O15 | 0.0310 (9) | 0.0638 (12) | 0.0197 (8) | 0.0206 (9) | 0.0083 (8) | 0.0092 (8) |
| C5 | 0.0153 (9) | 0.0247 (9) | 0.0132 (9) | 0.0035 (7) | 0.0017 (7) | −0.0002 (8) |
| C6 | 0.0175 (10) | 0.0236 (9) | 0.0133 (9) | 0.0003 (8) | −0.0001 (7) | −0.0009 (7) |
| C7 | 0.0171 (10) | 0.0232 (9) | 0.0151 (10) | 0.0000 (8) | −0.0009 (8) | −0.0001 (8) |
| C8 | 0.0199 (10) | 0.0215 (9) | 0.0153 (9) | −0.0010 (8) | 0.0015 (8) | 0.0008 (8) |
| O16 | 0.0232 (8) | 0.0309 (8) | 0.0178 (8) | −0.0013 (7) | 0.0002 (7) | −0.0037 (7) |
| C1 | 0.026 (2) | 0.037 (2) | 0.039 (3) | 0.0030 (17) | −0.009 (2) | 0.004 (3) |
| C2 | 0.0195 (19) | 0.023 (3) | 0.033 (3) | 0.0017 (17) | 0.000 (2) | 0.000 (2) |
| C3 | 0.0249 (18) | 0.029 (2) | 0.044 (2) | 0.0039 (15) | 0.0006 (17) | −0.0014 (18) |
| C4 | 0.031 (2) | 0.041 (2) | 0.044 (2) | −0.0027 (17) | 0.0089 (18) | −0.0054 (19) |
| N9 | 0.015 (3) | 0.021 (4) | 0.017 (2) | −0.0038 (19) | −0.0024 (18) | −0.001 (2) |
| C1A | 0.050 (7) | 0.030 (5) | 0.040 (7) | 0.001 (4) | −0.007 (8) | 0.002 (6) |
| C2A | 0.043 (6) | 0.033 (7) | 0.025 (6) | 0.005 (5) | 0.001 (5) | 0.010 (4) |
| C3A | 0.030 (4) | 0.038 (5) | 0.030 (5) | 0.007 (4) | 0.010 (4) | 0.000 (4) |
| C4A | 0.065 (8) | 0.048 (6) | 0.063 (7) | 0.027 (5) | 0.029 (6) | 0.015 (5) |
| N9A | 0.024 (6) | 0.021 (9) | 0.021 (5) | 0.010 (4) | 0.003 (4) | −0.003 (5) |
| O10—C5 | 1.276 (3) | C3—H3B | 0.9900 |
| O11—C5 | 1.238 (3) | C3—C4 | 1.513 (6) |
| O12—H12 | 0.90 (3) | C4—H4A | 0.9800 |
| O12—C6 | 1.419 (2) | C4—H4B | 0.9800 |
| O13—H13 | 0.85 (3) | C4—H4C | 0.9800 |
| O13—C7 | 1.403 (3) | N9—H9C | 0.92 (2) |
| O14—H14 | 0.93 (4) | N9—H9A | 0.93 (2) |
| O14—C8 | 1.299 (3) | N9—H9B | 0.91 (2) |
| O15—C8 | 1.216 (3) | C1A—H1AA | 0.9800 |
| C5—C6 | 1.530 (3) | C1A—H1AB | 0.9800 |
| C6—H6 | 1.0000 | C1A—H1AC | 0.9800 |
| C6—C7 | 1.532 (3) | C1A—C2A | 1.517 (14) |
| C7—H7 | 1.0000 | C2A—H2A | 1.0000 |
| C7—C8 | 1.535 (3) | C2A—C3A | 1.518 (12) |
| O16—H16A | 0.87 (4) | C2A—N9A | 1.497 (15) |
| O16—H16B | 0.83 (4) | C3A—H3AA | 0.9900 |
| C1—H1A | 0.9800 | C3A—H3AB | 0.9900 |
| C1—H1B | 0.9800 | C3A—C4A | 1.514 (12) |
| C1—H1C | 0.9800 | C4A—H4AA | 0.9800 |
| C1—C2 | 1.542 (7) | C4A—H4AB | 0.9800 |
| C2—H2 | 1.0000 | C4A—H4AC | 0.9800 |
| C2—C3 | 1.513 (6) | N9A—H9AA | 0.91 (3) |
| C2—N9 | 1.498 (8) | N9A—H9AB | 0.90 (3) |
| C3—H3A | 0.9900 | N9A—H9AC | 0.91 (3) |
| C6—O12—H12 | 105 (2) | C3—C4—H4B | 109.5 |
| C7—O13—H13 | 112 (2) | C3—C4—H4C | 109.5 |
| C8—O14—H14 | 110 (3) | H4A—C4—H4B | 109.5 |
| O10—C5—C6 | 116.04 (18) | H4A—C4—H4C | 109.5 |
| O11—C5—O10 | 126.33 (19) | H4B—C4—H4C | 109.5 |
| O11—C5—C6 | 117.59 (18) | C2—N9—H9C | 116 (5) |
| O12—C6—C5 | 110.11 (17) | C2—N9—H9A | 108 (3) |
| O12—C6—H6 | 108.5 | C2—N9—H9B | 106 (3) |
| O12—C6—C7 | 110.12 (16) | H9C—N9—H9A | 108 (3) |
| C5—C6—H6 | 108.5 | H9C—N9—H9B | 111 (4) |
| C5—C6—C7 | 110.96 (17) | H9A—N9—H9B | 107 (3) |
| C7—C6—H6 | 108.5 | H1AA—C1A—H1AB | 109.5 |
| O13—C7—C6 | 111.94 (17) | H1AA—C1A—H1AC | 109.5 |
| O13—C7—H7 | 108.8 | H1AB—C1A—H1AC | 109.5 |
| O13—C7—C8 | 107.33 (16) | C2A—C1A—H1AA | 109.5 |
| C6—C7—H7 | 108.8 | C2A—C1A—H1AB | 109.5 |
| C6—C7—C8 | 111.13 (17) | C2A—C1A—H1AC | 109.5 |
| C8—C7—H7 | 108.8 | C1A—C2A—H2A | 107.1 |
| O14—C8—C7 | 114.02 (18) | C1A—C2A—C3A | 115.6 (11) |
| O15—C8—O14 | 125.2 (2) | C3A—C2A—H2A | 107.1 |
| O15—C8—C7 | 120.83 (19) | N9A—C2A—C1A | 109.4 (13) |
| H16A—O16—H16B | 109 (3) | N9A—C2A—H2A | 107.1 |
| H1A—C1—H1B | 109.5 | N9A—C2A—C3A | 110.0 (12) |
| H1A—C1—H1C | 109.5 | C2A—C3A—H3AA | 108.5 |
| H1B—C1—H1C | 109.5 | C2A—C3A—H3AB | 108.5 |
| C2—C1—H1A | 109.5 | H3AA—C3A—H3AB | 107.5 |
| C2—C1—H1B | 109.5 | C4A—C3A—C2A | 115.2 (8) |
| C2—C1—H1C | 109.5 | C4A—C3A—H3AA | 108.5 |
| C1—C2—H2 | 108.4 | C4A—C3A—H3AB | 108.5 |
| C3—C2—C1 | 112.1 (4) | C3A—C4A—H4AA | 109.5 |
| C3—C2—H2 | 108.4 | C3A—C4A—H4AB | 109.5 |
| N9—C2—C1 | 108.4 (5) | C3A—C4A—H4AC | 109.5 |
| N9—C2—H2 | 108.4 | H4AA—C4A—H4AB | 109.5 |
| N9—C2—C3 | 111.0 (5) | H4AA—C4A—H4AC | 109.5 |
| C2—C3—H3A | 108.6 | H4AB—C4A—H4AC | 109.5 |
| C2—C3—H3B | 108.6 | C2A—N9A—H9AA | 119 (8) |
| H3A—C3—H3B | 107.6 | C2A—N9A—H9AB | 98 (8) |
| C4—C3—C2 | 114.7 (4) | C2A—N9A—H9AC | 104 (6) |
| C4—C3—H3A | 108.6 | H9AA—N9A—H9AB | 111 (4) |
| C4—C3—H3B | 108.6 | H9AA—N9A—H9AC | 111 (4) |
| C3—C4—H4A | 109.5 | H9AB—N9A—H9AC | 112 (4) |
| H··· | ||||
| O12—H12···O11 | 0.90 (3) | 2.00 (3) | 2.602 (2) | 123 (3) |
| O13—H13···O16 | 0.85 (3) | 1.83 (3) | 2.662 (2) | 167 (3) |
| O14—H14···O10i | 0.93 (4) | 1.58 (5) | 2.499 (2) | 171 (5) |
| O16—H16 | 0.87 (4) | 1.93 (4) | 2.791 (2) | 169 (4) |
| O16—H16 | 0.83 (4) | 2.01 (3) | 2.822 (2) | 167 (3) |
| N9—H9 | 0.93 (2) | 1.89 (2) | 2.803 (9) | 167 (4) |
| N9—H9 | 0.91 (2) | 1.97 (3) | 2.869 (11) | 169 (4) |
| N9—H9 | 0.92 (2) | 2.16 (4) | 2.922 (13) | 140 (5) |
| N9—H9 | 0.92 (2) | 2.20 (4) | 3.001 (12) | 145 (5) |
| N9 | 0.91 (3) | 1.87 (4) | 2.76 (2) | 164 (8) |
| N9 | 0.90 (3) | 1.96 (6) | 2.79 (3) | 151 (9) |
| N9 | 0.90 (3) | 2.21 (8) | 2.83 (3) | 126 (6) |
| N9 | 0.91 (3) | 1.99 (5) | 2.81 (3) | 150 (7) |