Literature DB >> 28526549

Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.

Thuy Doan1, Nisha R Acharya1, Benjamin A Pinsky2, Malaya K Sahoo3, Eric D Chow4, Niaz Banaei2, Indre Budvytiene5, Vicky Cevallos6, Lina Zhong6, Zhaoxia Zhou6, Thomas M Lietman1, Joseph L DeRisi7.   

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Year:  2017        PMID： 28526549      PMCID： PMC5533302          DOI： 10.1016/j.ophtha.2017.03.045

Source DB:  PubMed          Journal:  Ophthalmology        ISSN： 0161-6420            Impact factor:   12.079


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  5 in total

1.  Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel.

Authors:  Erin H Graf; Keith E Simmon; Keith D Tardif; Weston Hymas; Steven Flygare; Karen Eilbeck; Mark Yandell; Robert Schlaberg
Journal:  J Clin Microbiol       Date:  2016-01-27       Impact factor: 5.948

2.  Detection of cytomegalovirus drug resistance mutations by next-generation sequencing.

Authors:  Malaya K Sahoo; Martina I Lefterova; Fumiko Yamamoto; Jesse J Waggoner; Sunwen Chou; Susan P Holmes; Matthew W Anderson; Benjamin A Pinsky
Journal:  J Clin Microbiol       Date:  2013-08-28       Impact factor: 5.948

3.  Role of molecular diagnostics in ocular microbiology.

Authors:  Parisa Taravati; Deborah Lam; Russell N Van Gelder
Journal:  Curr Ophthalmol Rep       Date:  2013-12-01

4.  Digital droplet PCR (ddPCR) for the precise quantification of human T-lymphotropic virus 1 proviral loads in peripheral blood and cerebrospinal fluid of HAM/TSP patients and identification of viral mutations.

Authors:  Giovanna S Brunetto; Raya Massoud; Emily C Leibovitch; Breanna Caruso; Kory Johnson; Joan Ohayon; Kaylan Fenton; Irene Cortese; Steven Jacobson
Journal:  J Neurovirol       Date:  2014-04-30       Impact factor: 2.643

5.  Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.

Authors:  Thuy Doan; Michael R Wilson; Emily D Crawford; Eric D Chow; Lillian M Khan; Kristeene A Knopp; Brian D O'Donovan; Dongxiang Xia; Jill K Hacker; Jay M Stewart; John A Gonzales; Nisha R Acharya; Joseph L DeRisi
Journal:  Genome Med       Date:  2016-08-25       Impact factor: 11.117
  5 in total
  18 in total

1.  Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Secondary Glaucoma in Patients With Cytomegalovirus-Induced Corneal Endotheliitis.

Authors:  Wei Wu; Hua Jiang; Ying Zhang; Yang Zhou; Guannan Bai; Lingwei Shen; Hongwei Zhou; Xiangjun Chen; Lidan Hu
Journal:  Front Microbiol       Date:  2022-07-05       Impact factor: 6.064

Review 2.  Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.

Authors:  Wei Gu; Steve Miller; Charles Y Chiu
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472

3.  Comprehensive pathogen detection for ocular infections.

Authors:  Thuy Doan; Malaya K Sahoo; Kevin Ruder; ChunHong Huang; Lina Zhong; Cindi Chen; Armin Hinterwirth; Charles Lin; John A Gonzales; Benjamin A Pinsky; Nisha R Acharya
Journal:  J Clin Virol       Date:  2021-02-11       Impact factor: 3.168

4.  Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies.

Authors:  Kumeren N Govender; Teresa L Street; Nicholas D Sanderson; David W Eyre
Journal:  J Clin Microbiol       Date:  2021-08-18       Impact factor: 5.948

5.  Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial.

Authors:  Thuy Doan; Armin Hinterwirth; Ahmed M Arzika; Sun Y Cotter; Kathryn J Ray; Kieran S O'Brien; Lina Zhong; Eric D Chow; Zhaoxia Zhou; Susie L Cummings; Dionna Fry; Catherine E Oldenburg; Lee Worden; Travis C Porco; Jeremy D Keenan; Thomas M Lietman
Journal:  Open Forum Infect Dis       Date:  2018-07-24       Impact factor: 3.835

Review 6.  Highlighting Clinical Metagenomics for Enhanced Diagnostic Decision-making: A Step Towards Wider Implementation.

Authors:  Jessica D Forbes; Natalie C Knox; Christy-Lynn Peterson; Aleisha R Reimer
Journal:  Comput Struct Biotechnol J       Date:  2018-02-27       Impact factor: 7.271

7.  Next-generation sequencing for the detection of microorganisms present in human donor corneal preservation medium.

Authors:  Mohit Parekh; Davide Borroni; Vito Romano; Stephen B Kaye; Davide Camposampiero; Diego Ponzin; Stefano Ferrari
Journal:  BMJ Open Ophthalmol       Date:  2019-04-20

8.  Rapid Reduction of Campylobacter Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.

Authors:  Armin Hinterwirth; Ali Sié; Boubacar Coulibaly; Lucienne Ouermi; Clarisse Dah; Charlemagne Tapsoba; Lina Zhong; Cindi Chen; Thomas M Lietman; Jeremy D Keenan; Thuy Doan; Catherine E Oldenburg
Journal:  Am J Trop Med Hyg       Date:  2020-09       Impact factor: 2.345

9.  Translating Lung Microbiome Profiles into the Next-Generation Diagnostic Gold Standard for Pneumonia: a Clinical Investigator's Perspective.

Authors:  Georgios D Kitsios
Journal:  mSystems       Date:  2018-03-13       Impact factor: 6.496

10.  Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.

Authors:  Thuy Doan; Lee Worden; Armin Hinterwirth; Ahmed M Arzika; Ramatou Maliki; Amza Abdou; Lina Zhong; Cindi Chen; Catherine Cook; Elodie Lebas; Kieran S O'Brien; Catherine E Oldenburg; Eric D Chow; Travis C Porco; Marc Lipsitch; Jeremy D Keenan; Thomas M Lietman
Journal:  N Engl J Med       Date:  2020-11-12       Impact factor: 91.245
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