Literature DB >> 28525563

Omics Biomarkers in Ophthalmology.

Susette Lauwen1, Eiko K de Jong1, Dirk J Lefeber2, Al den Hollander3.   

Abstract

"Omics" refers to high-throughput analyses of genes, proteins, or metabolites in a biological system, and is increasingly used for ophthalmic research. These system-based approaches can unravel disease-related processes and are valuable for biomarker discovery. Furthermore, potential therapeutic targets can be identified based on omics results, and targeted follow-up experiments can be designed to gain molecular understanding of the disease and to test new therapies. Here, we review the application of omics techniques in eye diseases, focusing on age-related macular degeneration (AMD), diabetic retinopathy (DR), retinal detachment (RD), myopia, glaucoma, Fuchs' corneal dystrophy (FCD), cataract, keratoconus, and dry eyes. We observe that genomic analyses were mainly successful in AMD research (almost half of the genomic heritability has been explained), whereas large parts of disease variability or risk remain unsolved in most of the other diseases. Other omics studies like transcriptomics, proteomics, and metabolomics provided additional candidate proteins and pathways for several eye diseases, although sample sizes in these studies were often very small and replication is lacking. In order to translate omics results into clinical biomarkers, larger sample sizes and validation across different cohorts would be essential. In conclusion, omics-based studies are increasing in ophthalmology, and further application to the clinic might develop in the years to come. Integration of genomics with other type of omics data has the potential to improve the accuracy of predictive tests. Moreover, in the future, omics may lead to stratification of patients into subgroups based on molecular profiles, enabling the development of personalized treatments.

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Year:  2017        PMID: 28525563     DOI: 10.1167/iovs.17-21809

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  9 in total

1.  Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.

Authors:  Rosa L Schellevis; Elon H C van Dijk; Myrte B Breukink; Lebriz Altay; Bjorn Bakker; Bobby P C Koeleman; Lambertus A Kiemeney; Dorine W Swinkels; Jan E E Keunen; Sascha Fauser; Carel B Hoyng; Anneke I den Hollander; Camiel J F Boon; Eiko K de Jong
Journal:  JAMA Ophthalmol       Date:  2018-10-01       Impact factor: 7.389

2.  Proteomic analysis of corneal endothelial cell-descemet membrane tissues reveals influence of insulin dependence and disease severity in type 2 diabetes mellitus.

Authors:  Jessica M Skeie; Benjamin T Aldrich; Andrew S Goldstein; Gregory A Schmidt; Cynthia R Reed; Mark A Greiner
Journal:  PLoS One       Date:  2018-03-12       Impact factor: 3.240

3.  Personalized Proteomics for Precision Health: Identifying Biomarkers of Vitreoretinal Disease.

Authors:  Gabriel Velez; Peter H Tang; Thiago Cabral; Galaxy Y Cho; Daniel A Machlab; Stephen H Tsang; Alexander G Bassuk; Vinit B Mahajan
Journal:  Transl Vis Sci Technol       Date:  2018-09-26       Impact factor: 3.283

4.  Metabolomics in serum of patients with non-advanced age-related macular degeneration reveals aberrations in the glutamine pathway.

Authors:  Eveline Kersten; Sascha Dammeier; Soufiane Ajana; Joannes M M Groenewoud; Marius Codrea; Franziska Klose; Yara T Lechanteur; Sascha Fauser; Marius Ueffing; Cécile Delcourt; Carel B Hoyng; Eiko K de Jong; Anneke I den Hollander
Journal:  PLoS One       Date:  2019-06-20       Impact factor: 3.240

5.  Molecular pathogenesis of rhegmatogenous retinal detachment.

Authors:  Tiina Öhman; Lisa Gawriyski; Sini Miettinen; Markku Varjosalo; Sirpa Loukovaara
Journal:  Sci Rep       Date:  2021-01-13       Impact factor: 4.379

6.  Vitreous metabolomics profiling of proliferative diabetic retinopathy.

Authors:  Yohei Tomita; Gael Cagnone; Zhongjie Fu; Bertan Cakir; Yumi Kotoda; Masaki Asakage; Yoshihiro Wakabayashi; Ann Hellström; Jean-Sébastien Joyal; Saswata Talukdar; Lois E H Smith; Yoshihiko Usui
Journal:  Diabetologia       Date:  2020-10-25       Impact factor: 10.122

7.  Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

Authors:  Mehdi Mirzaei; Veer B Gupta; Joel M Chick; Todd M Greco; Yunqi Wu; Nitin Chitranshi; Roshana Vander Wall; Eugene Hone; Liting Deng; Yogita Dheer; Mojdeh Abbasi; Mahdie Rezaeian; Nady Braidy; Yuyi You; Ghasem Hosseini Salekdeh; Paul A Haynes; Mark P Molloy; Ralph Martins; Ileana M Cristea; Steven P Gygi; Stuart L Graham; Vivek K Gupta
Journal:  Sci Rep       Date:  2017-10-04       Impact factor: 4.379

8.  Predicting the effect of 5-fluorouracil-based adjuvant chemotherapy on colorectal cancer recurrence: A model using gene expression profiles.

Authors:  Quan Chen; Peng Gao; Yongxi Song; Xuanzhang Huang; Qiong Xiao; Xiaowan Chen; Xinger Lv; Zhenning Wang
Journal:  Cancer Med       Date:  2020-03-09       Impact factor: 4.452

Review 9.  Antibody and Protein Profiles in Glaucoma: Screening of Biomarkers and Identification of Signaling Pathways.

Authors:  Nadine Auler; Henrik Tonner; Norbert Pfeiffer; Franz H Grus
Journal:  Biology (Basel)       Date:  2021-12-08
  9 in total

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