Literature DB >> 28521213

Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing.

Noelia Caro-Pérez1, María Martínez-Rebollar2, Josep Gregori3, Josep Quer4, Patricia González5, Martina Gambato6, Neris García-González7, Fernando González-Candelas8, Josep Costa9, Juan Ignacio Esteban10, Josep Mallolas11, Xavier Forns12, Montse Laguno13, Sofía Pérez-Del-Pulgar14.   

Abstract

BACKGROUND: The incidence of acute hepatitis C (AHC) among HIV-infected men who have sex with men (MSM) has increased significantly in the last 10 years. Several studies point to a social and sexual network of HIV-positive MSM that extends internationally.
OBJECTIVES: The aim of our study was to investigate the dynamics of HCV transmission in an outbreak of AHC in HIV-infected MSM in Barcelona by ultra-deep pyrosequencing. STUDY
DESIGN: Between 2008 and 2013, 113 cases of AHC in HIV-infected MSM were diagnosed in the Infectious Diseases Unit, Hospital Clínic, Barcelona. Massive sequencing was performed using the Roche 454 GS Junior platform. To define possible transmission networks, maximum likelihood phylogenetic trees were constructed, and levels of genetic diversity within and among patients were compared.
RESULTS: Among the 70 cases analyzed, we have identified 16 potential clusters of transmission: 8 for genotype 1a (23 cases involved), 1 for genotype 1b (3 cases) and 7 for genotype 4d (27 cases). Although the initial phylogenetic reconstruction suggested a local transmission cluster of HCV gt4d, our approach based on low genetic differentiation did not corroborate it. Indeed, gt4d strains formed 4 independent groups related to patients from other countries.
CONCLUSIONS: Frequent clustering of HIV-positive MSM shows that HCV infection has spread through a local network in Barcelona. This outbreak is related to a large international HCV transmission network among MSM. Public health efforts are needed to reduce HCV transmission among this high-risk group.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Acute hepatitis C; HCV transmission; HIV-coinfection; Ultra-deep pyrosequencing

Mesh:

Year:  2017        PMID: 28521213     DOI: 10.1016/j.jcv.2017.05.008

Source DB:  PubMed          Journal:  J Clin Virol        ISSN: 1386-6532            Impact factor:   3.168


  5 in total

Review 1.  Molecular evolution methods to study HIV-1 epidemics.

Authors:  Juan Á Patiño-Galindo; Fernando González-Candelas
Journal:  Future Virol       Date:  2018-05-21       Impact factor: 1.831

Review 2.  Insights From Deep Sequencing of the HBV Genome-Unique, Tiny, and Misunderstood.

Authors:  Anna L McNaughton; Valentina D'Arienzo; M Azim Ansari; Sheila F Lumley; Margaret Littlejohn; Peter Revill; Jane A McKeating; Philippa C Matthews
Journal:  Gastroenterology       Date:  2018-09-27       Impact factor: 22.682

3.  Molecular surveillance of hepatitis C virus genotypes identifies the emergence of a genotype 4d lineage among men in Quebec, 2001-2017.

Authors:  D G Murphy; R Dion; M Simard; M L Vachon; V Martel-Laferrière; B Serhir; J Longtin
Journal:  Can Commun Dis Rep       Date:  2019-09-05

Review 4.  Epidemiology and Elimination of HCV-Related Liver Disease.

Authors:  Pierre Pradat; Victor Virlogeux; Eric Trépo
Journal:  Viruses       Date:  2018-10-06       Impact factor: 5.048

5.  A Targeted Metagenomics Approach to Study the Diversity of Norovirus GII in Shellfish Implicated in Outbreaks.

Authors:  Marion Desdouits; Candice Wacrenier; Joanna Ollivier; Julien Schaeffer; Françoise S Le Guyader
Journal:  Viruses       Date:  2020-09-03       Impact factor: 5.048

  5 in total

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