Literature DB >> 28518058

Prediction of NSCLC recurrence from microarray data with GEP.

Russul Al-Anni1, Jingyu Hou2, Rana Dhia'a Abdu-Aljabar3, Yong Xiang2.   

Abstract

Lung cancer is one of the deadliest diseases in the world. Non-small cell lung cancer (NSCLC) is the most common and dangerous type of lung cancer. Despite the fact that NSCLC is preventable and curable for some cases if diagnosed at early stages, the vast majority of patients are diagnosed very late. Furthermore, NSCLC usually recurs sometime after treatment. Therefore, it is of paramount importance to predict NSCLC recurrence, so that specific and suitable treatments can be sought. Nonetheless, conventional methods of predicting cancer recurrence rely solely on histopathology data and predictions are not reliable in many cases. The microarray gene expression (GE) technology provides a promising and reliable way to predict NSCLC recurrence by analysing the GE of sample cells. This study proposes a new model from GE programming to use microarray datasets for NSCLC recurrence prediction. To this end, the authors also propose a hybrid method to rank and select relevant prognostic genes that are related to NSCLC recurrence prediction. The proposed model was evaluated on real NSCLC microarray datasets and compared with other representational models. The results demonstrated the effectiveness of the proposed model.

Entities:  

Mesh:

Year:  2017        PMID: 28518058      PMCID: PMC8687152          DOI: 10.1049/iet-syb.2016.0033

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  21 in total

Review 1.  Rules of evidence for cancer molecular-marker discovery and validation.

Authors:  David F Ransohoff
Journal:  Nat Rev Cancer       Date:  2004-04       Impact factor: 60.716

2.  Orthogonal least squares learning algorithm for radial basis function networks.

Authors:  S Chen; C N Cowan; P M Grant
Journal:  IEEE Trans Neural Netw       Date:  1991

3.  Hybrid genetic algorithm-neural network: feature extraction for unpreprocessed microarray data.

Authors:  Dong Ling Tong; Amanda C Schierz
Journal:  Artif Intell Med       Date:  2011-07-19       Impact factor: 5.326

4.  Quantitative classification based on CT histogram analysis of non-small cell lung cancer: correlation with histopathological characteristics and recurrence-free survival.

Authors:  Yoshiki Kawata; Noboru Niki; Hironobu Ohmatsu; Masahiko Kusumoto; Takaaki Tsuchida; Kenji Eguchi; Masahiro Kaneko; Noriyuki Moriyama
Journal:  Med Phys       Date:  2012-02       Impact factor: 4.071

5.  SVM-RFE with MRMR filter for gene selection.

Authors:  Piyushkumar A Mundra; Jagath C Rajapakse
Journal:  IEEE Trans Nanobioscience       Date:  2009-10-30       Impact factor: 2.935

6.  Lung cancer prediction from microarray data by gene expression programming.

Authors:  Hasseeb Azzawi; Jingyu Hou; Yong Xiang; Russul Alanni
Journal:  IET Syst Biol       Date:  2016-10       Impact factor: 1.615

7.  NCBI GEO: archive for functional genomics data sets--update.

Authors:  Tanya Barrett; Stephen E Wilhite; Pierre Ledoux; Carlos Evangelista; Irene F Kim; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Michelle Holko; Andrey Yefanov; Hyeseung Lee; Naigong Zhang; Cynthia L Robertson; Nadezhda Serova; Sean Davis; Alexandra Soboleva
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

8.  A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data.

Authors:  Pengyi Yang; Bing B Zhou; Zili Zhang; Albert Y Zomaya
Journal:  BMC Bioinformatics       Date:  2010-01-18       Impact factor: 3.169

9.  Development of novel breast cancer recurrence prediction model using support vector machine.

Authors:  Woojae Kim; Ku Sang Kim; Jeong Eon Lee; Dong-Young Noh; Sung-Won Kim; Yong Sik Jung; Man Young Park; Rae Woong Park
Journal:  J Breast Cancer       Date:  2012-06-28       Impact factor: 3.588

10.  Stable feature selection and classification algorithms for multiclass microarray data.

Authors:  Sebastian Student; Krzysztof Fujarewicz
Journal:  Biol Direct       Date:  2012-10-02       Impact factor: 4.540

View more
  3 in total

1.  Cancer adjuvant chemotherapy prediction model for non-small cell lung cancer.

Authors:  Russul Alanni; Jingyu Hou; Hasseeb Azzawi; Yong Xiang
Journal:  IET Syst Biol       Date:  2019-06       Impact factor: 1.615

2.  Deep gene selection method to select genes from microarray datasets for cancer classification.

Authors:  Russul Alanni; Jingyu Hou; Hasseeb Azzawi; Yong Xiang
Journal:  BMC Bioinformatics       Date:  2019-11-27       Impact factor: 3.169

3.  A novel gene selection algorithm for cancer classification using microarray datasets.

Authors:  Russul Alanni; Jingyu Hou; Hasseeb Azzawi; Yong Xiang
Journal:  BMC Med Genomics       Date:  2019-01-15       Impact factor: 3.063

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.