Literature DB >> 28511116

Functional RNA structures throughout the Hepatitis C Virus genome.

Rebecca L Adams1, Nathan Pirakitikulr1, Anna Marie Pyle2.   

Abstract

The single-stranded Hepatitis C Virus (HCV) genome adopts a set of elaborate RNA structures that are involved in every stage of the viral lifecycle. Recent advances in chemical probing, sequencing, and structural biology have facilitated analysis of RNA folding on a genome-wide scale, revealing novel structures and networks of interactions. These studies have underscored the active role played by RNA in every function of HCV and they open the door to new types of RNA-targeted therapeutics.
Copyright © 2017 Elsevier B.V. All rights reserved.

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Year:  2017        PMID： 28511116      PMCID： PMC5529263          DOI： 10.1016/j.coviro.2017.04.007

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN： 1879-6257            Impact factor:   7.090


  50 in total

1.  Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver.

Authors:  Shu-Hao Hsu; Bo Wang; Janaiah Kota; Jianhua Yu; Stefan Costinean; Huban Kutay; Lianbo Yu; Shoumei Bai; Krista La Perle; Raghu R Chivukula; Hsiaoyin Mao; Min Wei; K Reed Clark; Jerry R Mendell; Michael A Caligiuri; Samson T Jacob; Joshua T Mendell; Kalpana Ghoshal
Journal:  J Clin Invest       Date:  2012-07-23       Impact factor: 14.808

Review 2.  cis-Acting RNA elements in the hepatitis C virus RNA genome.

Authors:  Selena M Sagan; Jasmin Chahal; Peter Sarnow
Journal:  Virus Res       Date:  2015-01-07       Impact factor: 3.303

3.  Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

Authors:  M Honda; E A Brown; S M Lemon
Journal:  RNA       Date:  1996-10       Impact factor: 4.942

4.  Role of the hepatitis C virus core+1 open reading frame and core cis-acting RNA elements in viral RNA translation and replication.

Authors:  Niki Vassilaki; Peter Friebe; Philipe Meuleman; Stephanie Kallis; Artur Kaul; Glaucia Paranhos-Baccalà; Geert Leroux-Roels; Penelope Mavromara; Ralf Bartenschlager
Journal:  J Virol       Date:  2008-09-17       Impact factor: 5.103

5.  Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: updated criteria and genotype assignment web resource.

Authors:  Donald B Smith; Jens Bukh; Carla Kuiken; A Scott Muerhoff; Charles M Rice; Jack T Stapleton; Peter Simmonds
Journal:  Hepatology       Date:  2014-01       Impact factor: 17.425

6.  In vitro characterization of a miR-122-sensitive double-helical switch element in the 5' region of hepatitis C virus RNA.

Authors:  Rosa Díaz-Toledano; Ascensión Ariza-Mateos; Alex Birk; Belén Martínez-García; Jordi Gómez
Journal:  Nucleic Acids Res       Date:  2009-07-03       Impact factor: 16.971

7.  Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit.

Authors:  Yaser Hashem; Amedee des Georges; Vidya Dhote; Robert Langlois; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Christopher U T Hellen; Joachim Frank
Journal:  Nature       Date:  2013-11-03       Impact factor: 49.962

Review 8.  Reinventing HCV Treatment: Past and Future Perspectives.

Authors:  Wendy Carter; Sarah Connelly; Kimberly Struble
Journal:  J Clin Pharmacol       Date:  2016-11-04       Impact factor: 3.126

9.  The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production.

Authors:  Erich G Chapman; David A Costantino; Jennifer L Rabe; Stephanie L Moon; Jeffrey Wilusz; Jay C Nix; Jeffrey S Kieft
Journal:  Science       Date:  2014-04-18       Impact factor: 47.728

10.  Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution.

Authors:  Nick Quade; Daniel Boehringer; Marc Leibundgut; Joop van den Heuvel; Nenad Ban
Journal:  Nat Commun       Date:  2015-07-08       Impact factor: 14.919
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  14 in total

1.  Genetic Analysis of Serum-Derived Defective Hepatitis C Virus Genomes Revealed Novel Viral cis Elements for Virus Replication and Assembly.

Authors:  Qingchao Li; Yimin Tong; Yongfen Xu; Junqi Niu; Jin Zhong
Journal:  J Virol       Date:  2018-03-14       Impact factor: 5.103

2.  ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence.

Authors:  Volodymyr Tsybulskyi; Irmtraud M Meyer
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

Review 3.  Hepatitis C Virus Replication.

Authors:  Keisuke Tabata; Christopher J Neufeldt; Ralf Bartenschlager
Journal:  Cold Spring Harb Perspect Med       Date:  2020-03-02       Impact factor: 6.915

Review 4.  Signals Involved in Regulation of Hepatitis C Virus RNA Genome Translation and Replication.

Authors:  Michael Niepmann; Lyudmila A Shalamova; Gesche K Gerresheim; Oliver Rossbach
Journal:  Front Microbiol       Date:  2018-03-12       Impact factor: 5.640

Review 5.  Long Non-coding RNAs in Hepatitis C Virus-Infected Cells.

Authors:  Marina Barriocanal; Puri Fortes
Journal:  Front Microbiol       Date:  2017-09-28       Impact factor: 5.640

Review 6.  Hepatitis C virus vaccine design: focus on the humoral immune response.

Authors:  Daniel Sepulveda-Crespo; Salvador Resino; Isidoro Martinez
Journal:  J Biomed Sci       Date:  2020-07-06       Impact factor: 8.410

7.  Structural and functional analysis of the roles of the HCV 5' NCR miR122-dependent long-range association and SLVI in genome translation and replication.

Authors:  Kirsten Bentley; Jonathan P Cook; Andrew K Tuplin; David J Evans
Journal:  PeerJ       Date:  2018-11-06       Impact factor: 2.984

Review 8.  The Diverse Roles of microRNAs at the Host⁻Virus Interface.

Authors:  Annie Bernier; Selena M Sagan
Journal:  Viruses       Date:  2018-08-19       Impact factor: 5.048

9.  Genomic-Scale Interaction Involving Complementary Sequences in the Hepatitis C Virus 5'UTR Domain IIa and the RNA-Dependent RNA Polymerase Coding Region Promotes Efficient Virus Replication.

Authors:  Elodie Rance; Jerome E Tanner; Caroline Alfieri
Journal:  Viruses       Date:  2018-12-28       Impact factor: 5.048

10.  Compactness of viral genomes: effect of disperse and localized random mutations.

Authors:  Anže Lošdorfer Božič; Cristian Micheletti; Rudolf Podgornik; Luca Tubiana
Journal:  J Phys Condens Matter       Date:  2018-02-28       Impact factor: 2.333
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